Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1956822..1956965 | Replicon | chromosome |
| Accession | NZ_CP117696 | ||
| Organism | Salmonella enterica subsp. enterica serovar London strain F1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1956861..1956963 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1956822..1956965 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PTQ22_RS09320 | 1953246..1953944 | - | 699 | WP_023255939.1 | exodeoxyribonuclease X | - |
| PTQ22_RS09325 | 1953968..1954624 | - | 657 | WP_023245437.1 | carbon-nitrogen hydrolase family protein | - |
| PTQ22_RS09330 | 1954732..1954962 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PTQ22_RS09335 | 1955100..1955474 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| PTQ22_RS09340 | 1955475..1956350 | + | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| PTQ22_RS09345 | 1956367..1956720 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 1956822..1956965 | - | 144 | - | - | Antitoxin |
| - | 1956861..1956963 | + | 103 | - | - | Toxin |
| PTQ22_RS09350 | 1957103..1958182 | - | 1080 | WP_058107134.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| PTQ22_RS09355 | 1958215..1959366 | - | 1152 | Protein_1827 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| PTQ22_RS09360 | 1959355..1959546 | + | 192 | Protein_1828 | glycoside hydrolase family 19 protein | - |
| PTQ22_RS09365 | 1959600..1960133 | + | 534 | WP_023256014.1 | DUF2514 domain-containing protein | - |
| PTQ22_RS09370 | 1960390..1960557 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| PTQ22_RS09375 | 1960622..1960810 | - | 189 | WP_001034748.1 | hypothetical protein | - |
| PTQ22_RS09380 | 1960865..1961125 | + | 261 | Protein_1832 | DUF1441 family protein | - |
| PTQ22_RS09385 | 1961127..1961342 | + | 216 | Protein_1833 | shikimate transporter | - |
| PTQ22_RS09390 | 1961352..1961639 | + | 288 | Protein_1834 | macro domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 | 1951158..1977134 | 25976 | |
| inside | Prophage | - | sopE2 | 1951158..1990059 | 38901 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T272044 NZ_CP117696:1956861-1956963 [Salmonella enterica subsp. enterica serovar London]
GCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT272044 NZ_CP117696:c1956965-1956822 [Salmonella enterica subsp. enterica serovar London]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
