Detailed information of TA system TA297233

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): stbDE/-
• Location: 1161216..1161738
• Replicon: chromosome
• Accession: UFRD01000002
• Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023

Toxin (Protein)

• Gene name: stbE
• Uniprot ID: -
• Locus tag: NCTC12023_01331
• Protein ID: SUH96747.1
• Coordinates: 1161454..1161738 (+)
• Length: 95 a.a.

Antitoxin (Protein)

• Gene name: stbD
• Uniprot ID: -
• Locus tag: NCTC12023_01330
• Protein ID: SUH96746.1
• Coordinates: 1161216..1161464 (+)
• Length: 83 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
NCTC12023_01325	1156436..1157899	+	1464	SUH96742.1	coiled-coil protein	-
NCTC12023_01327	1158716..1159069	+	354	SUH96743.1	putative transposase	-
NCTC12023_01328	1159477..1160406	-	930	SUH96744.1	putative cytoplasmic protein	-
NCTC12023_01329	1160527..1160859	-	333	SUH96745.1	acyl carrier protein	-
NCTC12023_01330	1161216..1161464	+	249	SUH96746.1	plasmid stabilization protein	Antitoxin
NCTC12023_01331	1161454..1161738	+	285	SUH96747.1	RelE protein	Toxin
NCTC12023_01332	1161909..1162298	+	390	SUH96748.1	endoribonuclease L-PSP	-
NCTC12023_01333	1162350..1163429	-	1080	SUH96749.1	S-adenosylmethionine tRNA ribosyltransferase	-
NCTC12023_01334	1163622..1164110	-	489	SUH96750.1	transcriptional regulator, MarR family	-
NCTC12023_01335	1164155..1165663	+	1509	SUH96751.1	monooxygenase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	Similar MGE(s) Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE. Detail Genome accession Organism MGE type Related TA Coordinates Mash distance View NZ_AP023288 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-3835 Genomic island TA037183 2477222..2489307 0 View NZ_AP023289 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-3837 Genomic island TA037207 2545459..2557544 0 View NZ_AP023290 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-3844 Genomic island TA037231 2440269..2452354 0 View NZ_AP023291 Salmonella enterica subsp. enterica serovar Typhimurium strain L-4126 Genomic island TA037255 2450561..2462646 0 View NZ_AP023292 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4233 Genomic island TA037279 2424079..2436164 0 View NZ_AP023294 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4261 Genomic island TA037303 2423363..2435448 0 View NZ_AP023299 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4334 Genomic island TA037328 2423495..2435580 0 View NZ_AP023300 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4445 Genomic island TA037352 2423474..2435559 0 View NZ_AP023303 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4526 Genomic island TA037380 2481175..2493260 0 View NZ_AP023304 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4551 Genomic island TA037404 2462508..2474593 0 View NZ_AP023306 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4567 Genomic island TA037429 2423472..2435557 0 View NZ_AP023309 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4578 Genomic island TA037462 2396056..2408141 0 View NZ_AP023311 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4596 Genomic island TA037487 2424311..2436396 0 View NZ_AP023313 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4605 Genomic island TA037511 2415542..2427627 0 View NZ_AP023315 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4614 Genomic island TA037540 2423438..2435523 0 View NZ_AP023317 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4681 Genomic island TA037565 2462800..2474885 0 View NZ_AP023319 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4741 Genomic island TA037590 2422552..2434637 0 View NZ_CP047525 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF11077 Genomic island TA146371 2482342..2494427 0 View NZ_CP047531 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10484 Genomic island TA146446 2471556..2483641 0 View NZ_CP047535 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10452 Genomic island TA146471 2262318..2274403 0 View NZ_CP047544 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10250 Genomic island TA146576 2511196..2523281 0 View NZ_CP047546 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10236 Genomic island TA146601 2474850..2486935 0 View NZ_CP068696 Salmonella enterica subsp. enterica serovar Typhimurium strain NCCP16345 Genomic island TA187613 2920633..2932718 0 View NZ_CP069381 Salmonella enterica strain GSJ/2016-Sal-016 Genomic island TA190281 2337960..2349364 0.002 View NZ_CP074663 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN008081 Genomic island TA202578 2454034..2466119 0 View NZ_CP075141 Salmonella enterica strain CFSAN033950 Genomic island TA203290 2370084..2382169 0 View NZ_CP075372 Salmonella enterica strain no75 Genomic island TA203523 2503117..2515202 0 View NZ_CP077668 Salmonella enterica strain SP Genomic island TA207391 2529631..2541055 0.001 View NZ_CP081187 Salmonella enterica strain sg1722-1 Genomic island TA212659 2438076..2450150 0 View NZ_CP081189 Salmonella enterica strain sg1722-2 Genomic island TA212683 2399998..2412072 0 View NZ_CP082929 Salmonella enterica subsp. enterica serovar London isolate N18-04674 Genomic island TA215642 2318979..2330187 0.01 View NZ_CP085699 Salmonella enterica subsp. enterica serovar Typhimurium strain S29 Genomic island TA221100 2467966..2480051 0 View NZ_CP085819 Salmonella enterica subsp. enterica serovar Typhimurium strain Blastoise Genomic island TA221979 4353593..4365678 0 View NZ_CP085987 Salmonella enterica strain SZL 38 Genomic island TA222413 758876..770961 0 View NZ_CP086118 Salmonella enterica subsp. enterica serovar Typhimurium strain S34 Genomic island TA222560 2449114..2461199 0 View NZ_CP088138 Salmonella enterica subsp. enterica serovar Hissar strain SCPM-O-B-4549 Genomic island TA226802 2455244..2466696 0.002 View NZ_CP090529 Salmonella enterica strain 2008079-SE Genomic island TA231027 2482300..2494385 0 View NZ_CP090535 Salmonella enterica strain 2016089-SE Genomic island TA231081 2462207..2474292 0 View NZ_CP090539 Salmonella enterica strain 2016062-SE Genomic island TA231107 2529104..2541189 0 View NZ_CP090541 Salmonella enterica strain 2010112-SE Genomic island TA231132 2446245..2458330 0 View NZ_CP090545 Salmonella enterica strain 2017028-SE Genomic island TA231157 2525812..2537897 0 View NZ_CP091540 Salmonella enterica subsp. enterica serovar Typhimurium strain S46L1 Genomic island TA233585 2483407..2495492 0 View NZ_CP091542 Salmonella enterica subsp. enterica serovar Typhimurium strain S58L2 Genomic island TA233612 2483463..2495548 0 View NZ_CP091544 Salmonella enterica strain 1618 Genomic island TA233637 2523411..2535496 0 View NZ_CP091560 Salmonella enterica strain 179 Genomic island TA233762 2452526..2464611 0 View NZ_CP091569 Salmonella enterica strain 131 Genomic island TA233844 2444082..2457239 0.002 View NZ_CP091571 Salmonella enterica strain Genomic island TA233869 2473659..2485744 0 View NZ_CP093386 Salmonella enterica strain P048595 Genomic island TA238362 2454534..2466546 0 View NZ_CP094332 Salmonella enterica subsp. enterica strain 3018683606 Genomic island TA239682 2396887..2408972 0 View NZ_CP098438 Salmonella enterica subsp. enterica serovar Typhimurium strain ATOMSal-L6 Genomic island TA247626 2421845..2433930 0 View NZ_CP098834 Salmonella enterica subsp. enterica serovar Typhimurium strain GD19PS1 Genomic island TA248156 2443041..2455126 0 View NZ_CP099705 Salmonella enterica subsp. enterica serovar Typhimurium strain 013+ Genomic island TA249298 2440422..2452507 0 View NZ_CP100691 Salmonella enterica subsp. enterica serovar Typhimurium strain R17.3867 Genomic island TA251043 2541701..2552041 0.004 View NZ_CP100693 Salmonella enterica subsp. enterica serovar London strain R18.1595 Genomic island TA251057 2325275..2336483 0.01 View NZ_CP100707 Salmonella enterica subsp. enterica serovar Typhimurium strain R18.0409 Genomic island TA251138 2428623..2440708 0 View NZ_CP100715 Salmonella enterica subsp. enterica serovar Typhimurium strain R17.5474 Genomic island TA251183 2420066..2432151 0 View NZ_CP100732 Salmonella enterica subsp. enterica serovar Typhimurium strain R18.1932 Genomic island TA251267 2352157..2364242 0 View NZ_CP100739 Salmonella enterica subsp. enterica serovar Typhimurium strain R18.0292 Genomic island TA251311 2352158..2364243 0 View NZ_CP101372 Salmonella enterica strain SC2016025 Genomic island TA251957 2791351..2801691 0.004 View NZ_CP101373 Salmonella enterica strain SC2016042 Genomic island TA251976 2497592..2509677 0 View NZ_CP101375 Salmonella enterica strain SC2016090 Genomic island TA252000 3100863..3112948 0 View NZ_CP101376 Salmonella enterica strain SC2016091 Genomic island TA252017 2464702..2476787 0 View NZ_CP101379 Salmonella enterica strain SC2016290 Genomic island TA252040 2460008..2478061 0.01 View NZ_CP101382 Salmonella enterica strain SC2017030 Genomic island TA252063 2503564..2515649 0 View NZ_CP101386 Salmonella enterica strain SC2017100 Genomic island TA252083 2516942..2529027 0 View NZ_CP101388 Salmonella enterica strain SC2017167 Genomic island TA252103 2466796..2478881 0 View NZ_CP101390 Salmonella enterica strain SC2017297 Genomic island TA252123 2522707..2534792 0 View NZ_CP101907 Salmonella enterica subsp. enterica strain QA-1986 973 Genomic island TA252865 630242..640583 0.009 View NZ_CP101940 Salmonella enterica subsp. enterica strain QA-1986 974 Genomic island TA253042 630254..640583 0.009 View NZ_CP102669 Salmonella enterica subsp. enterica serovar Typhimurium strain ATCC 14028 Genomic island TA253917 2507782..2519867 0 View NZ_CP104366 Salmonella enterica subsp. enterica serovar Typhimurium strain PNUSAS028809 Genomic island TA257784 2422298..2434383 0 View NZ_CP104484 Salmonella enterica strain SalSpp_sample_07_No.3 Genomic island TA258083 2437008..2449093 0 View NZ_CP110198 Salmonella enterica subsp. enterica serovar Typhimurium strain 1104-75 Genomic island TA263399 2441135..2453220 0 View NZ_CP110201 Salmonella enterica subsp. enterica serovar Typhimurium strain 1104-65 Genomic island TA263420 2441335..2453420 0 View NZ_CP113535 Salmonella enterica strain ZLQ Genomic island TA265907 2480123..2492208 0 View NZ_CP113538 Salmonella enterica strain XSK Genomic island TA265960 2379910..2391995 0 View NZ_CP113539 Salmonella enterica strain FFL Genomic island TA265977 2324935..2336143 0.01 View NZ_CP113541 Salmonella enterica strain CHC Genomic island TA266016 2380145..2392230 0 View NZ_CP116042 Salmonella enterica subsp. enterica serovar 14[5]12:i:- strain BL708 Genomic island TA267686 2464360..2476445 0 View NZ_CP117033 Salmonella enterica strain PIW95_S14_0299 Genomic island TA269889 2462095..2474180 0 View NZ_CP117244 Salmonella enterica subsp. enterica serovar Typhimurium strain ATCC 14028 Genomic island TA270177 2416860..2428945 0 View NZ_CP117327 Salmonella enterica subsp. enterica serovar Saintpaul strain RM106 Genomic island TA270531 2325274..2336679 0.002 View NZ_CP117338 Salmonella enterica subsp. enterica serovar Typhimurium strain RM095 Genomic island TA270616 2381184..2393269 0.001 View NZ_CP117357 Salmonella enterica subsp. enterica serovar Typhimurium strain RM096 Genomic island TA270772 2462963..2475045 0.001 View NZ_CP117370 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain RM054 Genomic island TA270877 2464738..2476823 0 View NZ_CP117398 Salmonella enterica subsp. enterica serovar Typhimurium strain RM015 Genomic island TA271147 2470384..2482469 0 View NZ_CP117400 Salmonella enterica subsp. enterica serovar Typhimurium strain RM014 Genomic island TA271167 2470384..2482469 0 View NZ_CP117404 Salmonella enterica subsp. enterica serovar Typhimurium strain RM085 Genomic island TA271200 2417116..2429201 0 View NZ_CP117693 Salmonella enterica subsp. enterica serovar London strain S1 Genomic island TA272031 2295242..2306450 0.01 View NZ_CP117696 Salmonella enterica subsp. enterica serovar London strain F1 Genomic island TA272048 2296308..2307516 0.01 View NZ_CP117698 Salmonella enterica subsp. enterica serovar London strain L1 Genomic island TA272065 2295381..2306589 0.01 View NZ_CP121262 Salmonella enterica subsp. enterica serovar Typhimurium strain 013 Genomic island TA276148 2410515..2422600 0 View NZ_CP121298 Salmonella enterica subsp. enterica strain KKP 3080 Genomic island TA276261 2690559..2702644 0 View NZ_CP126138 Salmonella enterica subsp. enterica serovar Kottbus strain DSK01 Genomic island TA282662 2444583..2456892 0 View NZ_OU015323 Salmonella enterica subsp. enterica serovar Typhimurium strain AUSMDU00004549 isolate AUSMDU00004549 Genomic island TA294614 674240..688759 0.002 View NZ_OU015342 Salmonella enterica subsp. enterica serovar Typhimurium strain AUSMDU00007171 isolate AUSMDU00007171 Genomic island TA294664 2463677..2475762 0	inside	Genomic island	-	-	1156436..1168519	12083

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin-antitoxin system, RelE/ParE toxin family (6-84)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 95 a.a.
• Molecular weight: 11075.85 Da
• Isoelectric Point: 10.6500

>T297233 SUH96747.1 UFRD01000002:1161454-1161738 [Salmonella enterica subsp. enterica serovar Typhimurium]
MTYKLAFNESALKEWKKLGHTIQEQFKKKLRERLENPRVPASQLHGRKDQYKIKLRGAGYRLVYSVEDEIITVTVIGVGK
RENDAVYKMTRHRS

Nucleotide

• Length: 285 bp

>T297233 UFRD01000002:1161454-1161738 [Salmonella enterica subsp. enterica serovar Typhimurium]
ATGACTTATAAGCTGGCATTTAACGAATCAGCACTAAAAGAGTGGAAAAAACTGGGTCATACCATACAGGAACAGTTTAA
AAAAAAGCTAAGGGAACGGCTTGAAAACCCTCGGGTTCCGGCTTCTCAATTACATGGAAGAAAGGATCAGTACAAAATTA
AGCTGCGTGGTGCAGGATACAGGCTGGTGTACAGCGTCGAAGATGAAATTATCACGGTAACTGTCATTGGTGTTGGAAAG
CGTGAAAATGATGCCGTCTACAAAATGACACGACACAGAAGCTAA

Antitoxin

Protein

• Length: 83 a.a.
• Molecular weight: 9090.32 Da
• Isoelectric Point: 3.9820

>AT297233 SUH96746.1 UFRD01000002:1161216-1161464 [Salmonella enterica subsp. enterica serovar Typhimurium]
MAFQILTTTAASITELKRDPMGTFNAGDGAPVAILNRNEPAFYCVPPALYAHLMDILEDEELGRIIDERANERVIEVNID
DL

Nucleotide

• Length: 249 bp

>AT297233 UFRD01000002:1161216-1161464 [Salmonella enterica subsp. enterica serovar Typhimurium]
ATGGCATTTCAAATTTTAACGACTACTGCAGCAAGCATTACAGAACTGAAACGTGATCCAATGGGAACTTTCAATGCCGG
AGATGGCGCTCCAGTTGCCATTCTTAACCGCAATGAACCGGCTTTCTACTGTGTGCCTCCGGCACTTTATGCTCATCTTA
TGGATATTCTTGAGGATGAAGAACTCGGTCGTATTATCGATGAGCGTGCGAATGAACGCGTCATTGAGGTCAACATTGAT
GACTTATAA