MGE detailed information

MGE type: Genomic_island        MGE length: 10427 bp
Accession: UFRD01000002        Location: 4599654..4610080         Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023       Replicon: chromosome

Gene structure

Location: 4594767..4595147 (381 bp)
Type: Others
Protein ID: SUI00078.1

Location: 4599654..4599830 (177 bp)
Type: Transposase
Protein ID: SUI00081.1

Location: 4601406..4601732 (327 bp)
Type: Others
Protein ID: SUI00084.1

Location: 4604018..4604767 (750 bp)
Type: VF
Protein ID: SUI00088.1

Location: 4604764..4606452 (1689 bp)
Type: VF
Protein ID: SUI00089.1

Location: 4606449..4607567 (1119 bp)
Type: VF
Protein ID: SUI00090.1

Location: 4607592..4609649 (2058 bp)
Type: VF
Protein ID: SUI00091.1

Location: 4609673..4610080 (408 bp)
Type: VF
Protein ID: SUI00092.1

Location: 4610077..4611372 (1296 bp)
Type: Others
Protein ID: SUI00093.1

Location: 4611350..4611793 (444 bp)
Type: Others
Protein ID: SUI00094.1

Location: 4611793..4612803 (1011 bp)
Type: Others
Protein ID: SUI00095.1

Location: 4612803..4613714 (912 bp)
Type: Others
Protein ID: SUI00096.1

Location: 4613704..4614378 (675 bp)
Type: Others
Protein ID: SUI00097.1

Location: 4614404..4614664 (261 bp)
Type: Others
Protein ID: SUI00098.1

Location: 4595203..4597770 (2568 bp)
Type: Others
Protein ID: SUI00079.1

Location: 4598622..4599278 (657 bp)
Type: Others
Protein ID: SUI00080.1

Location: 4599903..4600430 (528 bp)
Type: Toxin
Protein ID: SUI00082.1

Location: 4600427..4600708 (282 bp)
Type: Antitoxin
Protein ID: SUI00083.1

Location: 4602005..4602337 (333 bp)
Type: Others
Protein ID: SUI00085.1

Location: 4602337..4602786 (450 bp)
Type: Others
Protein ID: SUI00086.1

Location: 4603217..4603660 (444 bp)
Type: VF
Protein ID: SUI00087.1

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Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
NCTC12023_04867	4594767..4595147	+	381	SUI00078.1	putative cytoplasmic protein	-
NCTC12023_04868	4595203..4597770	-	2568	SUI00079.1	DNA mismatch repair protein MutS	-
NCTC12023_04869	4598622..4599278	-	657	SUI00080.1	serine/threonine protein phosphatase	-
NCTC12023_04870	4599654..4599830	+	177	SUI00081.1	IS5 family transposase ISEcl3	Transposase
NCTC12023_04871	4599903..4600430	-	528	SUI00082.1	acetyltransferase	Toxin Detail
NCTC12023_04872	4600427..4600708	-	282	SUI00083.1	ABC transporter	Antitoxin Detail
NCTC12023_04873	4601406..4601732	+	327	SUI00084.1	putative cytoplasmic protein	-
NCTC12023_04874	4602005..4602337	-	333	SUI00085.1	PrpA and PrpB, metallophosphatase domain protein	-
NCTC12023_04875	4602337..4602786	-	450	SUI00086.1	membrane protein	-
NCTC12023_04877	4603217..4603660	-	444	SUI00087.1	Type 3 secretion system pilotin	VF
NCTC12023_04878	4604018..4604767	+	750	SUI00088.1	Invasion protein InvF	VF
NCTC12023_04879	4604764..4606452	+	1689	SUI00089.1	Type 3 secretion system secretin	VF
NCTC12023_04880	4606449..4607567	+	1119	SUI00090.1	Protein MxiC	VF
NCTC12023_04881	4607592..4609649	+	2058	SUI00091.1	Invasion protein InvA	VF
NCTC12023_04882	4609673..4610080	+	408	SUI00092.1	Surface presentation of antigens protein SpaK	VF
NCTC12023_04883	4610077..4611372	+	1296	SUI00093.1	secretory apparatus ATP synthase (associated with virulence)	-
NCTC12023_04884	4611350..4611793	+	444	SUI00094.1	virulence associated secretory protein	-
NCTC12023_04885	4611793..4612803	+	1011	SUI00095.1	antigen presentation protein SpaN	-
NCTC12023_04886	4612803..4613714	+	912	SUI00096.1	surface presentation of antigens protein SpaO	-
NCTC12023_04887	4613704..4614378	+	675	SUI00097.1	virulence associated secretory protein	-

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Similar MGE(s)

Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

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Detail	Organism	MGE type	Related TA	Genome accession	Coordinates	Mash distance
	Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-3835	Genomic island	TA37174	NZ_AP023288	1045315..1055741	0
	Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-3837	Genomic island	TA37198	NZ_AP023289	1108472..1118898	0
	Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-3844	Genomic island	TA37222	NZ_AP023290	1027792..1038218	0
	Salmonella enterica subsp. enterica serovar Typhimurium strain L-4126	Genomic island	TA37246	NZ_AP023291	995800..1006226	0
	Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4233	Genomic island	TA37270	NZ_AP023292	995816..1006242	0
	Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4261	Genomic island	TA37294	NZ_AP023294	995814..1006240	0
	Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4334	Genomic island	TA37319	NZ_AP023299	995928..1006354	0
	Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4445	Genomic island	TA37343	NZ_AP023300	995916..1006342	0
	Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4526	Genomic island	TA37372	NZ_AP023303	1027886..1038312	0
	Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4551	Genomic island	TA37395	NZ_AP023304	1029229..1039655	0
	Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4567	Genomic island	TA37420	NZ_AP023306	995916..1006342	0
	Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4578	Genomic island	TA37453	NZ_AP023309	995888..1006314	0
	Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4596	Genomic island	TA37478	NZ_AP023311	994884..1006342	0.003
	Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4605	Genomic island	TA37502	NZ_AP023313	995919..1006345	0
	Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4614	Genomic island	TA37531	NZ_AP023315	995896..1006322	0
	Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4681	Genomic island	TA37556	NZ_AP023317	1028617..1039043	0
	Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4741	Genomic island	TA37581	NZ_AP023319	995916..1006342	0
	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189	Genomic island	TA124046	NZ_CP039502	1042186..1052671	0.008
	Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF11077	Genomic island	TA146362	NZ_CP047525	1029023..1039449	0
	Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10484	Genomic island	TA146437	NZ_CP047531	1027592..1038018	0
	Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10452	Genomic island	TA146462	NZ_CP047535	827633..838059	0
	Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10250	Genomic island	TA146567	NZ_CP047544	1026726..1038184	0.003
	Salmonella enterica subsp. enterica serovar Typhimurium strain ER3625	Genomic island	TA185724	NZ_CP067091	2975739..2986767	0.004
	Salmonella enterica subsp. enterica serovar Typhimurium strain LB5000	Genomic island	TA186253	NZ_CP067397	2976471..2987499	0.004
	Salmonella enterica subsp. enterica serovar Typhimurium strain NCCP16345	Genomic island	TA187604	NZ_CP068696	1466671..1477097	0
	Salmonella enterica strain GSJ/2016-Sal-016	Genomic island	TA190272	NZ_CP069381	987124..997550	0.002
	Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN008081	Genomic island	TA202569	NZ_CP074663	994492..1005950	0.003
	Salmonella enterica strain CFSAN060808	Genomic island	TA202845	NZ_CP075108	953819..964255	0.007
	Salmonella enterica strain CFSAN060807	Genomic island	TA202865	NZ_CP075109	960644..971056	0.01
	Salmonella enterica subsp. enterica serovar Stanleyville strain CFSAN059881	Genomic island	TA202975	NZ_CP075116	1006475..1016902	0.007
	Salmonella enterica strain CFSAN044875	Genomic island	TA203238	NZ_CP075138	1034077..1044489	0.007
	Salmonella enterica strain CFSAN033950	Genomic island	TA203275	NZ_CP075141	987576..999034	0.003
	Salmonella enterica strain no75	Genomic island	TA203514	NZ_CP075372	1077742..1088168	0
	Salmonella enterica strain SP	Genomic island	TA207382	NZ_CP077668	1027767..1038193	0
	Salmonella enterica strain S90	Genomic island	TA207404	NZ_CP077670	978847..989236	0.006
	Salmonella enterica subsp. enterica strain CFSAN058565	Genomic island	TA207584	NZ_CP077704	981465..991914	0.01
	Salmonella enterica strain sg1722-1	Genomic island	TA212650	NZ_CP081187	1027577..1038003	0
	Salmonella enterica strain sg1722-2	Genomic island	TA212674	NZ_CP081189	1027777..1038203	0
	Salmonella enterica subsp. enterica serovar Typhimurium strain Blastoise	Genomic island	TA221970	NZ_CP085819	2889199..2899625	0
	Salmonella enterica strain SZL 31	Genomic island	TA222385	NZ_CP085983	1255618..1266008	0.008
	Salmonella enterica subsp. enterica serovar Typhimurium strain S34	Genomic island	TA222551	NZ_CP086118	1027780..1038206	0
	Salmonella enterica subsp. enterica serovar Hissar strain SCPM-O-B-4549	Genomic island	TA226793	NZ_CP088138	1026619..1037045	0
	Salmonella enterica subsp. enterica serovar Indiana strain YZ21MCS4	Genomic island	TA228027	NZ_CP089313	1062833..1073222	0.006
	Salmonella enterica strain 2008079-SE	Genomic island	TA231018	NZ_CP090529	1027601..1038027	0
	Salmonella enterica strain 2016062-SE	Genomic island	TA231098	NZ_CP090539	1108368..1118794	0
	Salmonella enterica strain 2010112-SE	Genomic island	TA231123	NZ_CP090541	995816..1006242	0
	Salmonella enterica strain 2017028-SE	Genomic island	TA231148	NZ_CP090545	1108284..1118710	0
	Salmonella enterica subsp. enterica serovar Typhimurium strain S46L1	Genomic island	TA233574	NZ_CP091540	995444..1005870	0
	Salmonella enterica subsp. enterica serovar Typhimurium strain S58L2	Genomic island	TA233601	NZ_CP091542	995689..1006115	0
	Salmonella enterica strain 1618	Genomic island	TA233628	NZ_CP091544	1110833..1121259	0
	Salmonella enterica strain 632	Genomic island	TA233703	NZ_CP091556	1030892..1041318	0
	Salmonella enterica strain 418	Genomic island	TA233741	NZ_CP091558	3868408..3878834	0
	Salmonella enterica strain 179	Genomic island	TA233753	NZ_CP091560	1026082..1036508	0
	Salmonella enterica strain	Genomic island	TA233860	NZ_CP091571	1027731..1038157	0
	Salmonella enterica strain P048595	Genomic island	TA238353	NZ_CP093386	995023..1005449	0
	Salmonella enterica subsp. enterica serovar Infantis strain R21.1147	Genomic island	TA238445	NZ_CP093400	1013843..1024233	0.008
	Salmonella enterica subsp. enterica strain 3018683606	Genomic island	TA239673	NZ_CP094332	995820..1006246	0
	Salmonella enterica subsp. enterica serovar Indiana strain 22	Genomic island	TA242751	NZ_CP096118	1124921..1136378	0.009
	Salmonella enterica subsp. enterica serovar Typhimurium strain ATOMSal-L6	Genomic island	TA247621	NZ_CP098438	1038396..1048822	0
	Salmonella enterica subsp. enterica serovar Indiana strain YZ20MCS14	Genomic island	TA248132	NZ_CP098831	979387..989776	0.006
	Salmonella enterica subsp. enterica serovar Typhimurium strain GD19PS1	Genomic island	TA248151	NZ_CP098834	1027919..1038345	0
	Salmonella enterica subsp. enterica serovar Typhimurium strain 013+	Genomic island	TA249293	NZ_CP099705	1025215..1035641	0
	Salmonella enterica subsp. enterica serovar Typhimurium strain R17.3867	Genomic island	TA251038	NZ_CP100691	1075041..1086499	0.003
	Salmonella enterica subsp. enterica serovar Typhimurium strain R17.3867	Genomic island	TA251038	NZ_CP100691	1076073..1086499	0
	Salmonella enterica subsp. enterica serovar Weltevreden strain R18.0830	Genomic island	TA251068	NZ_CP100695	1013483..1023908	0.009
	Salmonella enterica subsp. enterica serovar Agona strain R18.2256	Genomic island	TA251089	NZ_CP100698	1017474..1027804	0.009
	Salmonella enterica subsp. enterica serovar Typhimurium strain R18.0409	Genomic island	TA251133	NZ_CP100707	1027819..1038245	0
	Salmonella enterica subsp. enterica serovar Typhimurium strain R17.5474	Genomic island	TA251178	NZ_CP100715	995816..1006242	0
	Salmonella enterica subsp. enterica serovar Typhimurium strain R17.5474	Genomic island	TA251178	NZ_CP100715	996065..1006242	0.001
	Salmonella enterica subsp. enterica serovar Weltevreden strain R17.4942	Genomic island	TA251196	NZ_CP100718	1048420..1058845	0.009
	Salmonella enterica subsp. enterica serovar Typhimurium strain R18.1932	Genomic island	TA251262	NZ_CP100732	994519..1004945	0
	Salmonella enterica subsp. enterica serovar Agona strain R18.1477	Genomic island	TA251284	NZ_CP100736	1017474..1027804	0.009
	Salmonella enterica subsp. enterica serovar Typhimurium strain R18.0292	Genomic island	TA251306	NZ_CP100739	994519..1004945	0
	Salmonella enterica subsp. enterica serovar Newport strain R18.0234	Genomic island	TA251325	NZ_CP100744	1011096..1022645	0.009
	Salmonella enterica subsp. enterica serovar Newport strain R18.0234	Genomic island	TA251325	NZ_CP100744	1012171..1022645	0.006
	Salmonella enterica strain SC2016025	Genomic island	TA251952	NZ_CP101372	1370640..1381066	0
	Salmonella enterica strain SC2016042	Genomic island	TA251971	NZ_CP101373	1076505..1086931	0
	Salmonella enterica strain SC2016090	Genomic island	TA251995	NZ_CP101375	1681902..1692328	0
	Salmonella enterica strain SC2016091	Genomic island	TA252012	NZ_CP101376	1027728..1038154	0
	Salmonella enterica strain SC2016290	Genomic island	TA252035	NZ_CP101379	1027783..1038209	0
	Salmonella enterica strain SC2017030	Genomic island	TA252058	NZ_CP101382	1076566..1086992	0
	Salmonella enterica strain SC2017100	Genomic island	TA252078	NZ_CP101386	1108359..1118785	0
	Salmonella enterica strain SC2017167	Genomic island	TA252098	NZ_CP101388	1028488..1038914	0
	Salmonella enterica strain SC2017297	Genomic island	TA252118	NZ_CP101390	1108473..1118899	0
	Salmonella enterica subsp. enterica strain QA-1986 973	Genomic island	TA252877	NZ_CP101907	4111189..4121633	0.006
	Salmonella enterica subsp. enterica strain QA-1986 974	Genomic island	TA253054	NZ_CP101940	4145338..4155782	0.006
	Salmonella enterica subsp. enterica serovar Typhimurium strain ATCC 14028	Genomic island	TA253912	NZ_CP102669	990087..1000513	0
	Salmonella enterica subsp. enterica serovar Infantis strain MRS17_00712	Genomic island	TA256669	NZ_CP103791	1007472..1017862	0.008
	Salmonella enterica subsp. enterica serovar Typhimurium strain PNUSAS028809	Genomic island	TA257779	NZ_CP104366	995012..1005438	0
	Salmonella enterica strain SalSpp_sample_07_No.3	Genomic island	TA258078	NZ_CP104484	1027658..1038084	0
	Salmonella enterica strain SalSpp_sample_05_No.1	Genomic island	TA258112	NZ_CP104491	1000431..1010869	0.006
	Salmonella enterica strain PNUSAS036471	Genomic island	TA258948	NZ_CP104677	954853..966402	0.009
	Salmonella enterica subsp. enterica serovar Typhimurium strain 1104-75	Genomic island	TA263394	NZ_CP110198	1027442..1037868	0
	Salmonella enterica subsp. enterica serovar Typhimurium strain 1104-65	Genomic island	TA263415	NZ_CP110201	1027642..1038068	0
	Salmonella enterica strain ZYX	Genomic island	TA265884	NZ_CP113534	991720..1003183	0.01
	Salmonella enterica strain ZLQ	Genomic island	TA265902	NZ_CP113535	1108484..1118910	0
	Salmonella enterica strain ZCX	Genomic island	TA265921	NZ_CP113536	1029104..1039530	0
	Salmonella enterica strain YZY	Genomic island	TA265938	NZ_CP113537	1006939..1018418	0.01
	Salmonella enterica strain XSK	Genomic island	TA265955	NZ_CP113538	1023965..1034391	0
	Salmonella enterica strain XSK	Genomic island	TA265955	NZ_CP113538	1024214..1034391	0.001
	Salmonella enterica strain CHC	Genomic island	TA266011	NZ_CP113541	1024093..1034519	0
	Salmonella enterica subsp. enterica serovar 14[5]12:i:- strain BL708	Genomic island	TA267681	NZ_CP116042	1027561..1037987	0
	Salmonella enterica strain PIW95_S14_0299	Genomic island	TA269884	NZ_CP117033	1027458..1037884	0
	Salmonella enterica subsp. enterica serovar Typhimurium strain ATCC 14028	Genomic island	TA270172	NZ_CP117244	990081..1000507	0
	Salmonella enterica subsp. enterica serovar Saintpaul strain RM106	Genomic island	TA270526	NZ_CP117327	993223..1003649	0.002
	Salmonella enterica subsp. enterica serovar Typhimurium strain RM095	Genomic island	TA270611	NZ_CP117338	995732..1006158	0
	Salmonella enterica subsp. enterica serovar Heidelberg strain RM101	Genomic island	TA270698	NZ_CP117348	1022679..1033070	0.008
	Salmonella enterica subsp. enterica serovar Typhimurium strain RM096	Genomic island	TA270767	NZ_CP117357	1025190..1035616	0
	Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain RM054	Genomic island	TA270872	NZ_CP117370	1027784..1038210	0
	Salmonella enterica subsp. enterica serovar Uganda strain RM018	Genomic island	TA270973	NZ_CP117382	990351..1000763	0.01
	Salmonella enterica subsp. enterica serovar Uganda strain RM013	Genomic island	TA270995	NZ_CP117384	990660..1001072	0.01
	Salmonella enterica subsp. enterica serovar Uganda strain RM011	Genomic island	TA271017	NZ_CP117386	990505..1000917	0.01
	Salmonella enterica subsp. enterica serovar Uganda strain RM010	Genomic island	TA271039	NZ_CP117388	990530..1000942	0.01
	Salmonella enterica subsp. enterica serovar Uganda strain RM008	Genomic island	TA271061	NZ_CP117390	990575..1000987	0.01
	Salmonella enterica subsp. enterica serovar Uganda strain RM017	Genomic island	TA271096	NZ_CP117394	990400..1000812	0.01
	Salmonella enterica subsp. enterica serovar Uganda strain RM016	Genomic island	TA271118	NZ_CP117396	990506..1000918	0.01
	Salmonella enterica subsp. enterica serovar Typhimurium strain RM015	Genomic island	TA271142	NZ_CP117398	996518..1007976	0.003
	Salmonella enterica subsp. enterica serovar Typhimurium strain RM015	Genomic island	TA271142	NZ_CP117398	997550..1007976	0
	Salmonella enterica subsp. enterica serovar Typhimurium strain RM014	Genomic island	TA271162	NZ_CP117400	997550..1007976	0
	Salmonella enterica subsp. enterica serovar Typhimurium strain RM085	Genomic island	TA271195	NZ_CP117404	997466..1007889	0
	Salmonella enterica subsp. enterica serovar Goldcoast isolate Sal02792	Genomic island	TA273820	NZ_CP119137	1006995..1018474	0.01
	Salmonella enterica subsp. enterica serovar Infantis strain R21.0914	Genomic island	TA275537	NZ_CP121066	1013619..1024009	0.008
	Salmonella enterica subsp. enterica serovar Infantis strain R21.1575	Genomic island	TA275557	NZ_CP121068	1013481..1023871	0.008
	Salmonella enterica subsp. enterica serovar Infantis strain R22.0044	Genomic island	TA275578	NZ_CP121070	1013843..1024233	0.008
	Salmonella enterica subsp. enterica serovar Infantis strain R22.2169	Genomic island	TA275599	NZ_CP121073	1013843..1024233	0.008
	Salmonella enterica subsp. enterica serovar Infantis strain R22.2574	Genomic island	TA275622	NZ_CP121075	1343042..1353432	0.007
	Salmonella enterica subsp. enterica serovar Infantis strain R22.3740	Genomic island	TA275635	NZ_CP121076	1013782..1024172	0.008
	Salmonella enterica subsp. enterica serovar Indiana strain S1467	Genomic island	TA276016	NZ_CP121189	1100088..1111545	0.009
	Salmonella enterica subsp. enterica serovar Typhimurium strain 013	Genomic island	TA276143	NZ_CP121262	995309..1005735	0
	Salmonella enterica subsp. enterica strain KKP 3080	Genomic island	TA276256	NZ_CP121298	1341048..1351474	0
	Salmonella enterica subsp. enterica strain TZ282	Genomic island	TA276947	NZ_CP122457	1003547..1013972	0.008
	Salmonella enterica subsp. enterica serovar Kottbus strain DSK01	Genomic island	TA282657	NZ_CP126138	995356..1005782	0
	Salmonella enterica subsp. enterica strain HL21	Genomic island	TA282769	NZ_CP126325	1028028..1038503	0.006
	Salmonella enterica subsp. enterica serovar Heidelberg isolate FT3-7B	Genomic island	TA284495	NZ_CP128261	1003649..1014040	0.008
	Salmonella enterica subsp. enterica serovar Typhimurium strain AUSMDU00027944 isolate AUSMDU00027944	Genomic island	TA294649	NZ_OU015340	4280636..4291062	0
	Salmonella enterica subsp. enterica serovar Typhimurium strain AUSMDU00007171 isolate AUSMDU00007171	Genomic island	TA294659	NZ_OU015342	1027420..1037846	0