SecReT6, T6SS database

Rhizobiaceae

Experimental investigation has been performed.

Bioinformatics investigation has been performed

T6SS ID	Type	Organism	Replicon (Accession)	Location	Function
T6SS00016	i5	Agrobacterium fabrum str. C58	chromosome linear (NC_003063)	1460756..1488734	anti-eukaryotic; anti-bacterial; effector translocation
T6SS00897	i5	Rhizobium leguminosarum bv. trifolii	chromosome (AF361470)	744..17137	anti-eukaryotic; effector translocation
T6SS01103	i5	Agrobacterium tumefaciens strain 1D1609	chromosome (NZ_CP026925)	1612910..1635897	anti-bacterial
T6SS01240	i5	Agrobacterium fabrum strain 1D132	chromosome (NZ_CP033023)	1429744..1454431	anti-bacterial
T6SS01241	i5	Agrobacterium tumefaciens strain 12D1	chromosome (NZ_CP033032)	1717106..1741674	anti-bacterial
T6SS01242	i5	Agrobacterium tumefaciens strain 1D1108	chromosome (NZ_CP032922)	2042910..2067248	anti-bacterial
T6SS01243	i5	Agrobacterium fabrum strain 12D13	chromosome (NZ_CP033035)	1420086..1444587	anti-bacterial
T6SS01244	i5	Agrobacterium tumefaciens strain 1D1460	chromosome (NZ_CP032927)	1440614..1465080	anti-bacterial
T6SS01245	i5	Agrobacterium tumefaciens strain 15955	chromosome (NZ_CP032918)	1999377..2023762	anti-bacterial
T6SS01246	i5	Agrobacterium tumefaciens strain A6	chromosome (NZ_CP033028)	2000609..2024994	anti-bacterial
T6SS01261	i5	Rhizobium etli bv. mimosae str. Mim1	plasmid pRetMIM1f (NC_021911)	489772..515517	-

Experimental investigation has been performed.

Bioinformatics investigation has been performed

Regulator ID	Locus tag (Gene)	Related T6SS	Regulator type	Regulatory pathway	Organism	Replicon (Accession)	Coordinates (Strand)	NCBI ID	Target (Regulation)
REG0077	Atu4335 (Fha/TagH)	T6SS00016	protein	Tpp	Agrobacterium fabrum str. C58	chromosome (NC_003063)	1467064..1468263 (-)	499280697	Unknown (↓)
REG0078	Atu4330 (PpkA)	T6SS00016	protein	Tpp	Agrobacterium fabrum str. C58	chromosome (NC_003063)	1458366..1459271 (-)	737274050	Unknown (↓)
REG0079	Atu4331 (TagF-PppA)	T6SS00016	protein	Tpp	Agrobacterium fabrum str. C58	chromosome (NC_003063)	1459258..1460673 (-)	159186120	Fha (Atu4335) (↑)
REG0080	Atu2091	T6SS00016	protein	c-di-GMP regulatory pathway	Agrobacterium fabrum str. C58	chromosome (NC_003063)	2054055..2054864 (-)	159185045	the levels of c-di-GMP (↑)
REG0081	Atu5372	T6SS00016	protein	c-di-GMP regulatory pathway	Agrobacterium fabrum str. C58	chromosome (NC_003064)	363293..364387 (+)	1805892863	the levels of c-di-GMP (↑)
REG0082	Atu1257 (DgcA)	T6SS00016	protein	c-di-GMP regulatory pathway	Agrobacterium fabrum str. C58	chromosome (NC_003062)	1244567..1245814 (-)	159184686	the levels of c-di-GMP (↑)
REG0083	Atu2179 (DgcC)	T6SS00016	protein	c-di-GMP regulatory pathway	Agrobacterium fabrum str. C58	chromosome (NC_003062)	2154605..2155744 (-)	159185090	the levels of c-di-GMP (↑)
REG0084	chvG	T6SS00016	protein	TCS-HK	Agrobacterium fabrum str. C58	chromosome (NC_003062)	34679..36469 (-)		chvI (↓)
REG0085	chvI	T6SS00016	protein	TCS-RR	Agrobacterium fabrum str. C58	chromosome (NC_003062)	36525..37250 (-)		The intergenic region of the imp and hcp operons (↓)
REG0086	exoR	T6SS00016	protein	TCS regulatory pathway	Agrobacterium fabrum str. C58	chromosome (NC_003062)	1702398..1703192 (-)		chvG (↑)

Experimental investigation has been performed.

Bioinformatics investigation has been performed

Effector ID	Locus tag (Gene)	Classification	Cognate immunity protein	Related T6SS	Organism	Replicon (Accession)	Coordinates (Strand)	NCBI ID
EFF00996	Atu4347 (Tae4)	Tae	IMU00053 ; IMU00192	T6SS00016	Agrobacterium fabrum str. C58	chromosome (NC_003063)	1480980..1481480 (+)	159186127
EFF01852	At1D132_RS21395 (Tae4)	Tae		T6SS01240	Agrobacterium fabrum strain 1D132	chromosome (NZ_CP033023)	1451466..1451966 (+)	493359403
EFF01857	At1D1108_RS23245 (Tae4)	Tae	-	T6SS01242	Agrobacterium tumefaciens strain 1D1108	chromosome (NZ_CP032922)	2064623..2065123 (+)	503526812
EFF01860	ATU_RS20360 (Tae4)	Tae	-	T6SS01243	Agrobacterium fabrum strain 12D13	chromosome (NZ_CP033035)	1480980..1481480 (+)	493359403
EFF01862	At1D1460_RS28410 (Tae4)	Tae	-	T6SS01244	Agrobacterium tumefaciens strain 1D1460	chromosome (NZ_CP032927)	1466206..1467774 (+)	1815605961
EFF01864	At15955_RS22930 (Tae4)	Tae	-	T6SS01245	Agrobacterium tumefaciens strain 15955	chromosome (NZ_CP032918)	2027347..2027895 (+)	503526804
EFF01866	AtA6_RS23270 (Tae4)	Tae	-	T6SS01246	Agrobacterium tumefaciens strain A6	chromosome (NZ_CP033028)	2028579..2029127 (+)	503526804
EFF01868	At1D1609_RS29810	Tae	IMU00350	T6SS01103	Agrobacterium tumefaciens strain 1D1609	chromosome (NZ_CP026925)	1637023..1638591 (+)	1852493397
EFF01308	Atu4350 (Tde1)	Tde	-	T6SS00016	Agrobacterium fabrum str. C58	chromosome (NC_003063)	1484901..1485737 (+)	15890633
EFF01307	Atu3640 (Tde2)	Tde	IMU00054	T6SS00016	Agrobacterium fabrum str. C58	chromosome (NC_003063)	692241..693821 (-)	15891300
EFF01828	At1D1609_44740 (V2a)	Tde	-	T6SS01103	Agrobacterium tumefaciens strain 1D1609	chromosome (NZ_CP026925)	1637023..1638591 (+)	1349686713
EFF01853	At1D132_RS21410 (Tde1)	Tde	-	T6SS01240	Agrobacterium fabrum strain 1D132	chromosome (NZ_CP033023)	1455387..1456223 (+)	499280706
EFF01855	At12D1_RS23110 (E4)	Tde	IMU00379	T6SS01241	Agrobacterium tumefaciens strain 12D1	chromosome (NZ_CP033032)	1742752..1743675 (+)	489600126
EFF00024	ATU_RS20350	-	-	T6SS00016	Agrobacterium fabrum str. C58	chromosome (NC_003063)	1479996..1480472 (+)	15890638
EFF01827	At1D1609_44690 (hcp)	-	-	T6SS01103	Agrobacterium tumefaciens strain 1D1609	chromosome (NZ_CP026925)	1632132..1632608 (+)	1349686708
EFF01843	At1D1609_RS18895	-	-	T6SS01103	Agrobacterium tumefaciens strain 1D1609	chromosome (NZ_CP026925)	713242..715506 (-)	1150861261
EFF01844	At1D1609_RS22460	-	-	T6SS01103	Agrobacterium tumefaciens strain 1D1609	chromosome (NZ_CP026925)	1475318..1477582 (+)	1352522504
EFF01845	At1D1609_RS23245	-	-	T6SS01103	Agrobacterium tumefaciens strain 1D1609	chromosome (NZ_CP026925)	1633633..1635897 (+)	1352522526
EFF01846	At1D1609_RS26290	-	-	T6SS01103	Agrobacterium tumefaciens strain 1D1609	chromosome (NZ_CP026925)	2295823..2298090 (+)	1352522879
EFF01851	At1D132_RS21385 (Hcp)	-	-	T6SS01240	Agrobacterium fabrum strain 1D132	chromosome (NZ_CP033023)	1450482..1450958 (+)	489600119
EFF01854	At12D1_RS23080 (Hcp)	-	-	T6SS01241	Agrobacterium tumefaciens strain 12D1	chromosome (NZ_CP033032)	1737810..1738286 (+)	489600119
EFF01856	At1D1108_RS23235 (hcp)	-	-	T6SS01242	Agrobacterium tumefaciens strain 1D1108	chromosome (NZ_CP032922)	2063637..2064113 (+)	490566468
EFF01858	At1D1108_RS23280 (E11)	-	IMU00380	T6SS01242	Agrobacterium tumefaciens strain 1D1108	chromosome (NZ_CP032922)	2072000..2073136 (+)	1421606991
EFF01859	At12D13_RS20965 (Hcp)	-		T6SS01243	Agrobacterium fabrum strain 12D13	chromosome (NZ_CP033035)	1440824..1441300 (+)	489600119
EFF01861	At1D1460_RS21380 (hcp)	-	-	T6SS01244	Agrobacterium tumefaciens strain 1D1460	chromosome (NZ_CP032927)	1461315..1461791 (+)	489600119
EFF01863	At15955_RS22890 (hcp)	-	-	T6SS01245	Agrobacterium tumefaciens strain 15955	chromosome (NZ_CP032918)	2020110..2020586 (+)	490566468
EFF01865	AtA6_RS23230 (hcp)	-	-	T6SS01246	Agrobacterium tumefaciens strain A6	chromosome (NZ_CP033028)	2021342..2021818 (+)	490566468
EFF01867	At1D1609_RS22470	-	-	T6SS01103	Agrobacterium tumefaciens strain 1D1609	chromosome (NZ_CP026925)	1478708..1479313 (+)	1349686563

Experimental investigation has been performed.

Bioinformatics investigation has been performed

Immunity protein ID	Locus tag (Gene)	Related T6SS	Organism	Replicon (Accession)	Coordinates (Strand)	Protein GI	Cognate effector
IMU00053	Atu4351 (Tdi1)	T6SS00016	Agrobacterium fabrum str. C58	chromosome (NC_003063)	1485765..1486439 (+)	15890632	EFF00996
IMU00054	Atu3639 (Tdi2)	T6SS00016	Agrobacterium fabrum str. C58	chromosome (NC_003063)	691507..692238 (-)	159185838	EFF01307
IMU00192	Atu4346 (Tai4)	T6SS00016	Agrobacterium fabrum str. C58	chromosome (NC_003063)	1480579..1480968 (+)	159186126	EFF00996
IMU00350	At1D1609_44750 (v3a)	T6SS01103	Agrobacterium tumefaciens strain 1D1609	chromosome (NZ_CP026925)	1638588..1639688 (+)	1349686714	EFF01868
IMU00379	At12D1_RS23115 (I4)	T6SS01241	Agrobacterium tumefaciens strain 12D1	chromosome (NZ_CP033032)	1743686..1744216 (+)	489600127	EFF01855
IMU00380	At1D1108_RS23285 (I11_1)	T6SS01242	Agrobacterium tumefaciens strain 1D1108	chromosome (NZ_CP032922)	2073146..2074138 (+)	490566480	EFF01858

Experimental investigation has been performed.

Bioinformatics investigation has been performed

ID	Locus tag (Gene)	Organism	Replicon (Accession)	Coordinates (Strand)	Protein GI	Response to T6SS attack	Known or putative function

Experimental investigation has been performed.

Bioinformatics investigation has been performed

Accessory protein ID	Locus tag (Gene)	Related T6SS	Type	Organism	Replicon (Accession)	Coordinates (Strand)	Protein GI	Related structure protein	Related effector
ACP00010	Atu4349 (tap-1)	T6SS00016	adaptor	Agrobacterium fabrum str. C58	chromosome (NC_003063)	1483948..1484904 (+)	737273750	Atu4348 (VgrG1)	Atu4350 (Tde1)
ACP00011	Atu3641	T6SS00016	adaptor	Agrobacterium fabrum str. C58	chromosome (NC_003063)	693818..694927 (-)	499279473	Atu3642 (VgrG2)	Atu3640 (Tde2)