Detailed information of effector
Summary


External database links
Locus tag (Gene) | At15955_RS22930 (Tae4) |
Coordinates (Strand) | 2027347..2027895 (+) |
NCBI ID | 503526804 |
RefSeq | NZ_CP032918 |
Uniprot ID | A0A1S7NBU7_9RHIZ, A0A1S7NCB1_9RHIZ, A0A1S7T4A2_RHIRD, F0LD95_AGRSH |
KEGG ID | agr:AGROH133_09361 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Inside | 1-23 | MTAVAAAGGEVLLGRAAAGVATR |
Transmembrane helix | 24-46 | LGARAALGFLGPVGAAIGLAMLA |
Outside | 47-182 | YEGYELYKMYNESHSEPADGEAGSCTGNCDSAKAEEQKKRQEELEDEAGVSQQTKGKTKHGEKDGGMAEAERDFDSLKPGKEKGIETQYGPGRTGELEDGSKVTVRPGSSDGRPTLQIRRPNGRQTEIRYNDGPGV |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.6301 | - | - |
Protein sequence: 183 a.a. .
>EFF01864 NZ_CP032918:2027347-2027895 [Agrobacterium tumefaciens]
MTAVAAAGGEVLLGRAAAGVATRLGARAALGFLGPVGAAIGLAMLAYEGYELYKMYNESHSEPADGEAGSCTGNCDSAKA
EEQKKRQEELEDEAGVSQQTKGKTKHGEKDGGMAEAERDFDSLKPGKEKGIETQYGPGRTGELEDGSKVTVRPGSSDGRP
TLQIRRPNGRQTEIRYNDGPGV*
MTAVAAAGGEVLLGRAAAGVATRLGARAALGFLGPVGAAIGLAMLAYEGYELYKMYNESHSEPADGEAGSCTGNCDSAKA
EEQKKRQEELEDEAGVSQQTKGKTKHGEKDGGMAEAERDFDSLKPGKEKGIETQYGPGRTGELEDGSKVTVRPGSSDGRP
TLQIRRPNGRQTEIRYNDGPGV*
Nucleotide sequence: 549 bp .
>EFF01864 NZ_CP032918:2027347-2027895 [Agrobacterium tumefaciens]
ATGACTGCCGTGGCTGCTGCTGGCGGGGAGGTTCTGCTTGGCCGTGCGGCTGCAGGCGTGGCAACGAGGCTCGGTGCCCG
CGCCGCGCTCGGTTTTCTTGGGCCAGTTGGTGCAGCAATCGGCCTCGCCATGCTGGCCTATGAAGGTTACGAACTCTACA
AAATGTACAATGAGAGCCATTCTGAACCCGCCGATGGCGAGGCGGGAAGCTGCACTGGGAACTGCGATTCGGCAAAGGCG
GAAGAACAGAAGAAGCGGCAAGAGGAACTGGAGGATGAAGCGGGCGTCAGTCAACAGACAAAGGGTAAGACAAAACACGG
CGAAAAGGATGGCGGTATGGCGGAAGCCGAACGCGACTTCGATTCCTTGAAACCGGGCAAGGAGAAAGGTATCGAAACAC
AATACGGGCCGGGCCGCACGGGGGAACTGGAAGACGGCAGCAAGGTTACCGTCCGTCCGGGAAGCTCTGACGGTCGTCCG
ACGTTGCAAATACGTAGGCCAAACGGTCGTCAGACCGAGATACGCTATAATGACGGACCTGGGGTTTAA
ATGACTGCCGTGGCTGCTGCTGGCGGGGAGGTTCTGCTTGGCCGTGCGGCTGCAGGCGTGGCAACGAGGCTCGGTGCCCG
CGCCGCGCTCGGTTTTCTTGGGCCAGTTGGTGCAGCAATCGGCCTCGCCATGCTGGCCTATGAAGGTTACGAACTCTACA
AAATGTACAATGAGAGCCATTCTGAACCCGCCGATGGCGAGGCGGGAAGCTGCACTGGGAACTGCGATTCGGCAAAGGCG
GAAGAACAGAAGAAGCGGCAAGAGGAACTGGAGGATGAAGCGGGCGTCAGTCAACAGACAAAGGGTAAGACAAAACACGG
CGAAAAGGATGGCGGTATGGCGGAAGCCGAACGCGACTTCGATTCCTTGAAACCGGGCAAGGAGAAAGGTATCGAAACAC
AATACGGGCCGGGCCGCACGGGGGAACTGGAAGACGGCAGCAAGGTTACCGTCCGTCCGGGAAGCTCTGACGGTCGTCCG
ACGTTGCAAATACGTAGGCCAAACGGTCGTCAGACCGAGATACGCTATAATGACGGACCTGGGGTTTAA