Detailed information of immunity protein


Summary

Immunity protein ID IMU00192 experimental
Cognate effector EFF00996 experimental
Related T6SS (Type) T6SS00016 experimental (Type i5)
Strain Agrobacterium fabrum str. C58
Replicon chromosome
Sequence Protein sequence (130 a.a.); Nucleotide sequence (390 bp)
Description Atu4346
Reference
-
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed

External database links

Locus tag (Gene) Atu4346 (Tai4)
Coordinates (Strand) 1480579..1480968 (+)
NCBI ID 159186126
RefSeq NC_003063
Uniprot ID A9CGG9_AGRFC
KEGG ID atu:Atu4346
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Rap1a PF18602.3 2.8e-13 58..124

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-129 MRSLYAVFVSVPFVLALSGLSPAGAAERTWIFSGAELKQAIEGKLAPDVSDPEMRRLVSVAKSSAYIAGVADLTSGSDWCGAGAVAPHELTDRIYTYLGDMPAEKLDEQAATLVREALKVSFPCEQKSN



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
SP(Sec/SPI) 0.9459 pos: 25-26. AGA-AE. MRSLYAVFVSVPFVLALSGLSPAGA



  Protein sequence: 130 a.a.    .

>IMU00192 NC_003063:1480579-1480968 [Agrobacterium fabrum str. C58]
MRSLYAVFVSVPFVLALSGLSPAGAAERTWIFSGAELKQAIEGKLAPDVSDPEMRRLVSVAKSSAYIAGVADLTSGSDWC
GAGAVAPHELTDRIYTYLGDMPAEKLDEQAATLVREALKVSFPCEQKSN*

  Nucleotide sequence: 390 bp    .

>IMU00192 NC_003063:1480579-1480968 [Agrobacterium fabrum str. C58]
ATGCGCTCCCTATATGCGGTTTTTGTCTCCGTGCCATTTGTTCTGGCCCTGTCCGGTCTCTCACCGGCCGGTGCGGCGGA
ACGGACATGGATATTCTCCGGTGCCGAACTCAAGCAGGCCATTGAGGGGAAGCTCGCTCCTGATGTGTCTGATCCGGAAA
TGCGGCGGCTGGTTTCCGTCGCAAAATCGAGCGCCTACATCGCCGGTGTGGCCGATCTGACAAGCGGATCGGACTGGTGT
GGTGCGGGTGCCGTTGCGCCCCATGAACTCACCGACCGGATCTACACCTATCTCGGCGATATGCCTGCGGAAAAACTGGA
TGAACAGGCAGCAACCCTCGTGCGGGAGGCGCTCAAGGTCTCCTTTCCCTGTGAGCAGAAAAGTAACTAG