Detailed information of immunity protein
Summary
| Immunity protein ID | IMU00192  |
| Cognate effector | EFF00996 |
| Related T6SS (Type) | T6SS00016 (Type i5) |
| Strain | Agrobacterium fabrum str. C58 |
| Replicon | chromosome |
| Sequence | Protein sequence (130 a.a.); Nucleotide sequence (390 bp) |
| Description | Atu4346 |
| Reference | - |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | Atu4346 (Tai4) |
| Coordinates (Strand) | 1480579..1480968 (+) |
| NCBI ID | 159186126 |
| RefSeq | NC_003063 |
| Uniprot ID | A9CGG9_AGRFC |
| KEGG ID | atu:Atu4346 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| Rap1a | PF18602.3 | 2.8e-13 | 58..124 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-129 | MRSLYAVFVSVPFVLALSGLSPAGAAERTWIFSGAELKQAIEGKLAPDVSDPEMRRLVSVAKSSAYIAGVADLTSGSDWCGAGAVAPHELTDRIYTYLGDMPAEKLDEQAATLVREALKVSFPCEQKSN |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| SP(Sec/SPI) | 0.9459 | pos: 25-26. AGA-AE. | MRSLYAVFVSVPFVLALSGLSPAGA |
Protein sequence: 130 a.a. .
>IMU00192 NC_003063:1480579-1480968 [Agrobacterium fabrum str. C58]
MRSLYAVFVSVPFVLALSGLSPAGAAERTWIFSGAELKQAIEGKLAPDVSDPEMRRLVSVAKSSAYIAGVADLTSGSDWC
GAGAVAPHELTDRIYTYLGDMPAEKLDEQAATLVREALKVSFPCEQKSN*
MRSLYAVFVSVPFVLALSGLSPAGAAERTWIFSGAELKQAIEGKLAPDVSDPEMRRLVSVAKSSAYIAGVADLTSGSDWC
GAGAVAPHELTDRIYTYLGDMPAEKLDEQAATLVREALKVSFPCEQKSN*
Nucleotide sequence: 390 bp .
>IMU00192 NC_003063:1480579-1480968 [Agrobacterium fabrum str. C58]
ATGCGCTCCCTATATGCGGTTTTTGTCTCCGTGCCATTTGTTCTGGCCCTGTCCGGTCTCTCACCGGCCGGTGCGGCGGA
ACGGACATGGATATTCTCCGGTGCCGAACTCAAGCAGGCCATTGAGGGGAAGCTCGCTCCTGATGTGTCTGATCCGGAAA
TGCGGCGGCTGGTTTCCGTCGCAAAATCGAGCGCCTACATCGCCGGTGTGGCCGATCTGACAAGCGGATCGGACTGGTGT
GGTGCGGGTGCCGTTGCGCCCCATGAACTCACCGACCGGATCTACACCTATCTCGGCGATATGCCTGCGGAAAAACTGGA
TGAACAGGCAGCAACCCTCGTGCGGGAGGCGCTCAAGGTCTCCTTTCCCTGTGAGCAGAAAAGTAACTAG
ATGCGCTCCCTATATGCGGTTTTTGTCTCCGTGCCATTTGTTCTGGCCCTGTCCGGTCTCTCACCGGCCGGTGCGGCGGA
ACGGACATGGATATTCTCCGGTGCCGAACTCAAGCAGGCCATTGAGGGGAAGCTCGCTCCTGATGTGTCTGATCCGGAAA
TGCGGCGGCTGGTTTCCGTCGCAAAATCGAGCGCCTACATCGCCGGTGTGGCCGATCTGACAAGCGGATCGGACTGGTGT
GGTGCGGGTGCCGTTGCGCCCCATGAACTCACCGACCGGATCTACACCTATCTCGGCGATATGCCTGCGGAAAAACTGGA
TGAACAGGCAGCAACCCTCGTGCGGGAGGCGCTCAAGGTCTCCTTTCCCTGTGAGCAGAAAAGTAACTAG