Detailed information of immunity protein


Summary

Immunity protein ID IMU00053 experimental
Cognate effector EFF00996 experimental
Related T6SS (Type) T6SS00016 experimental (Type i5)
Strain Agrobacterium fabrum str. C58
Replicon chromosome
Sequence Protein sequence (225 a.a.); Nucleotide sequence (675 bp)
Description Tdi1
Reference
-
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
External database links

Locus tag (Gene) Atu4351 (Tdi1)
Coordinates (Strand) 1485765..1486439 (+)
NCBI ID 15890632
RefSeq NC_003063
Uniprot ID Q7CUQ2_AGRFC
KEGG ID atu:Atu4351
PDB ID 6ITW
Pfam domain hit(s)

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Domain
Pfam ID
E-value
Aligned region
GAD-likePF08887.136e-357..110
DUF1851PF08906.131.8e-08140..201
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Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

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Prediction                
Region    
Sequence
Outside1-224MPELFITYENALKRFGLPENPEIMGEADIARYKNRIPETYLDFIRHAGLGIWKQGYFQFCNPEKYKSIVALALGGDKQLNPVRTHALGFSAFGKILAWNEDYKTTEINILLHRVTCRGLFKEIPAERSDINLGIAVEGIDAESFDAPDEKGKLMFNRLLKNLGKLQLGQIYSPKLHPSLGGQLTVENMRPVDALSAMTIAAQAGPFTLYDTTKPSTPAVRTIGS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
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Prediction       
Probability
Cleavage site
Signal peptide sequence
Other0.9934--


  Protein sequence: 225 a.a.    .

>IMU00053 NC_003063:1485765-1486439 [Agrobacterium fabrum str. C58]
MPELFITYENALKRFGLPENPEIMGEADIARYKNRIPETYLDFIRHAGLGIWKQGYFQFCNPEKYKSIVALALGGDKQLN
PVRTHALGFSAFGKILAWNEDYKTTEINILLHRVTCRGLFKEIPAERSDINLGIAVEGIDAESFDAPDEKGKLMFNRLLK
NLGKLQLGQIYSPKLHPSLGGQLTVENMRPVDALSAMTIAAQAGPFTLYDTTKPSTPAVRTIGS*

  Nucleotide sequence: 675 bp    .

>IMU00053 NC_003063:1485765-1486439 [Agrobacterium fabrum str. C58]
ATGCCAGAGCTTTTTATAACATATGAAAACGCCTTGAAGCGCTTTGGCTTGCCCGAAAATCCTGAAATTATGGGCGAGGC
AGATATTGCTCGGTATAAAAACAGGATTCCTGAAACCTATTTAGATTTTATTCGGCATGCAGGCCTGGGAATTTGGAAGC
AAGGCTATTTTCAGTTTTGTAATCCGGAAAAGTATAAGTCGATAGTAGCTTTAGCTTTGGGTGGCGACAAACAGCTGAAT
CCGGTTCGGACACACGCGTTGGGGTTTTCTGCGTTCGGAAAAATCTTGGCATGGAATGAAGACTATAAAACCACTGAAAT
TAACATCCTTCTTCATAGAGTGACATGCCGCGGGCTGTTCAAAGAGATTCCTGCTGAGCGATCTGACATCAACTTGGGTA
TAGCCGTTGAGGGGATTGATGCAGAATCCTTTGATGCTCCGGACGAGAAAGGTAAGCTTATGTTCAATCGACTTCTAAAA
AATTTGGGGAAGCTTCAGCTCGGCCAAATCTATTCACCGAAGTTACATCCATCGCTGGGTGGTCAGCTTACTGTTGAGAA
TATGCGTCCAGTTGATGCGCTTTCTGCCATGACTATTGCGGCTCAAGCTGGGCCGTTTACCCTATACGATACTACAAAGC
CATCTACGCCAGCAGTTCGTACTATTGGCAGCTAG