Detailed information of immunity protein
Summary
| Immunity protein ID | IMU00053  |
| Cognate effector | EFF00996 |
| Related T6SS (Type) | T6SS00016 (Type i5) |
| Strain | Agrobacterium fabrum str. C58 |
| Replicon | chromosome |
| Sequence | Protein sequence (225 a.a.); Nucleotide sequence (675 bp) |
| Description | Tdi1 |
| Reference | - |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | Atu4351 (Tdi1) |
| Coordinates (Strand) | 1485765..1486439 (+) |
| NCBI ID | 15890632 |
| RefSeq | NC_003063 |
| Uniprot ID | Q7CUQ2_AGRFC |
| KEGG ID | atu:Atu4351 |
| PDB ID | 6ITW |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GAD-like | PF08887.13 | 6e-35 | 7..110 |
| DUF1851 | PF08906.13 | 1.8e-08 | 140..201 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-224 | MPELFITYENALKRFGLPENPEIMGEADIARYKNRIPETYLDFIRHAGLGIWKQGYFQFCNPEKYKSIVALALGGDKQLNPVRTHALGFSAFGKILAWNEDYKTTEINILLHRVTCRGLFKEIPAERSDINLGIAVEGIDAESFDAPDEKGKLMFNRLLKNLGKLQLGQIYSPKLHPSLGGQLTVENMRPVDALSAMTIAAQAGPFTLYDTTKPSTPAVRTIGS |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9934 | - | - |
Protein sequence: 225 a.a. .
>IMU00053 NC_003063:1485765-1486439 [Agrobacterium fabrum str. C58]
MPELFITYENALKRFGLPENPEIMGEADIARYKNRIPETYLDFIRHAGLGIWKQGYFQFCNPEKYKSIVALALGGDKQLN
PVRTHALGFSAFGKILAWNEDYKTTEINILLHRVTCRGLFKEIPAERSDINLGIAVEGIDAESFDAPDEKGKLMFNRLLK
NLGKLQLGQIYSPKLHPSLGGQLTVENMRPVDALSAMTIAAQAGPFTLYDTTKPSTPAVRTIGS*
MPELFITYENALKRFGLPENPEIMGEADIARYKNRIPETYLDFIRHAGLGIWKQGYFQFCNPEKYKSIVALALGGDKQLN
PVRTHALGFSAFGKILAWNEDYKTTEINILLHRVTCRGLFKEIPAERSDINLGIAVEGIDAESFDAPDEKGKLMFNRLLK
NLGKLQLGQIYSPKLHPSLGGQLTVENMRPVDALSAMTIAAQAGPFTLYDTTKPSTPAVRTIGS*
Nucleotide sequence: 675 bp .
>IMU00053 NC_003063:1485765-1486439 [Agrobacterium fabrum str. C58]
ATGCCAGAGCTTTTTATAACATATGAAAACGCCTTGAAGCGCTTTGGCTTGCCCGAAAATCCTGAAATTATGGGCGAGGC
AGATATTGCTCGGTATAAAAACAGGATTCCTGAAACCTATTTAGATTTTATTCGGCATGCAGGCCTGGGAATTTGGAAGC
AAGGCTATTTTCAGTTTTGTAATCCGGAAAAGTATAAGTCGATAGTAGCTTTAGCTTTGGGTGGCGACAAACAGCTGAAT
CCGGTTCGGACACACGCGTTGGGGTTTTCTGCGTTCGGAAAAATCTTGGCATGGAATGAAGACTATAAAACCACTGAAAT
TAACATCCTTCTTCATAGAGTGACATGCCGCGGGCTGTTCAAAGAGATTCCTGCTGAGCGATCTGACATCAACTTGGGTA
TAGCCGTTGAGGGGATTGATGCAGAATCCTTTGATGCTCCGGACGAGAAAGGTAAGCTTATGTTCAATCGACTTCTAAAA
AATTTGGGGAAGCTTCAGCTCGGCCAAATCTATTCACCGAAGTTACATCCATCGCTGGGTGGTCAGCTTACTGTTGAGAA
TATGCGTCCAGTTGATGCGCTTTCTGCCATGACTATTGCGGCTCAAGCTGGGCCGTTTACCCTATACGATACTACAAAGC
CATCTACGCCAGCAGTTCGTACTATTGGCAGCTAG
ATGCCAGAGCTTTTTATAACATATGAAAACGCCTTGAAGCGCTTTGGCTTGCCCGAAAATCCTGAAATTATGGGCGAGGC
AGATATTGCTCGGTATAAAAACAGGATTCCTGAAACCTATTTAGATTTTATTCGGCATGCAGGCCTGGGAATTTGGAAGC
AAGGCTATTTTCAGTTTTGTAATCCGGAAAAGTATAAGTCGATAGTAGCTTTAGCTTTGGGTGGCGACAAACAGCTGAAT
CCGGTTCGGACACACGCGTTGGGGTTTTCTGCGTTCGGAAAAATCTTGGCATGGAATGAAGACTATAAAACCACTGAAAT
TAACATCCTTCTTCATAGAGTGACATGCCGCGGGCTGTTCAAAGAGATTCCTGCTGAGCGATCTGACATCAACTTGGGTA
TAGCCGTTGAGGGGATTGATGCAGAATCCTTTGATGCTCCGGACGAGAAAGGTAAGCTTATGTTCAATCGACTTCTAAAA
AATTTGGGGAAGCTTCAGCTCGGCCAAATCTATTCACCGAAGTTACATCCATCGCTGGGTGGTCAGCTTACTGTTGAGAA
TATGCGTCCAGTTGATGCGCTTTCTGCCATGACTATTGCGGCTCAAGCTGGGCCGTTTACCCTATACGATACTACAAAGC
CATCTACGCCAGCAGTTCGTACTATTGGCAGCTAG