Detailed information of regulator


Summary

Regulator ID REG0086 experimental
Regulator type protein
Regulatory pathway (from literatures) TCS regulatory pathway
KEGG pathway (determined by BlastKOALA) -
Related T6SS T6SS00016 experimental (Type i5)
Strain Agrobacterium fabrum str. C58
Replicon chromosome
Sequence Protein sequence (265 a.a.); Nucleotide sequence (795 bp)
Description Lack of exoR enhanced the expression of both imp and hcp operons and deletion of chvG in the ΔexoR mutant background abrogated the induced expression of imp and hcp operons.ExoR–ChvG interaction regulates ChvG protein level and T6SS expression/secretion.
Reference
External database links

Locus tag (Gene) exoR
Coordinates (Strand) 1702398..1703192 (-)
NCBI ID
RefSeq NC_003062
Uniprot ID -
KEGG ID -
KEGG pathway (determined by BlastKOALA) -
PDB ID -
  Target
Target Regulation (↓/↑) Target sequence
chvG ↑ -
Pfam domain hit(s) of regulator

Domain Pfam ID E-value Aligned region
Sel1 PF08238.14 1.1e-06 158..193
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-11 MLKCEANVLKP
Transmembrane helix 12-34 LLMGMLLASLAMPVLAFDINAGV
Outside 35-264 TKESGPFDLFKFGFKAYKNGNKDEAVEAYRYAAEKGHTGSRWALANMYAYGDGVAKNDLEAFKIYSEIASQGVEPGSEDTGFFVNALLSLADYYRHGIPGSPVKMDLSQARQLYFQVASTFGVAEAQFRLAEMILAGEGGRADVQQAKKWLNQARKHGHAGAMSIFGNLIFQEGQTTQGLAFMTAALDKCTVADCTWIQNLQEQAFSLAGENDRRAAIAMAQNMQFNDPD


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
SP(Sec/SPI) 0.9898 pos: 27-28. VLA-FD. MLKCEANVLKPLLMGMLLASLAMPVLA


  Protein sequence of regulator: 265 a.a.    .

>REG0086 NC_003062:c1703192-1702398 [Agrobacterium fabrum str. C58]
MLKCEANVLKPLLMGMLLASLAMPVLAFDINAGVTKESGPFDLFKFGFKAYKNGNKDEAVEAYRYAAEKGHTGSRWALAN
MYAYGDGVAKNDLEAFKIYSEIASQGVEPGSEDTGFFVNALLSLADYYRHGIPGSPVKMDLSQARQLYFQVASTFGVAEA
QFRLAEMILAGEGGRADVQQAKKWLNQARKHGHAGAMSIFGNLIFQEGQTTQGLAFMTAALDKCTVADCTWIQNLQEQAF
SLAGENDRRAAIAMAQNMQFNDPD*

  Nucleotide sequence of regulator: 795 bp    .

>REG0086 NC_003062:c1703192-1702398 [Agrobacterium fabrum str. C58]
ATGCTGAAATGTGAAGCCAACGTTTTAAAGCCGCTCCTTATGGGCATGTTGCTTGCGTCGCTCGCAATGCCGGTGCTGGC
TTTTGACATTAATGCGGGCGTGACCAAGGAATCCGGCCCCTTCGACCTGTTCAAGTTTGGCTTCAAGGCCTACAAGAACG
GCAACAAGGACGAAGCCGTCGAGGCCTATCGTTATGCGGCGGAAAAGGGCCATACCGGCTCGCGCTGGGCGCTTGCCAAT
ATGTATGCCTATGGCGACGGTGTCGCCAAGAACGATCTGGAAGCTTTCAAGATCTACAGCGAAATCGCCAGTCAGGGTGT
GGAGCCGGGTTCGGAAGATACCGGCTTCTTCGTCAACGCCCTTCTTTCCCTTGCCGATTATTACCGTCACGGCATTCCCG
GCAGCCCCGTGAAAATGGACCTATCACAGGCCCGTCAGCTTTATTTCCAGGTGGCTTCCACCTTTGGCGTGGCTGAAGCG
CAGTTCCGGCTGGCGGAGATGATCCTCGCGGGCGAGGGTGGCCGCGCCGATGTGCAGCAGGCGAAGAAGTGGCTCAACCA
GGCCCGCAAGCACGGCCATGCCGGCGCCATGTCGATTTTCGGCAACCTGATCTTCCAGGAAGGCCAGACGACGCAGGGGC
TGGCCTTCATGACGGCGGCACTTGATAAGTGCACGGTGGCCGACTGTACCTGGATCCAGAACCTGCAGGAGCAGGCCTTT
TCTCTCGCCGGTGAAAACGACCGCCGCGCCGCCATCGCCATGGCGCAGAACATGCAGTTCAACGATCCGGATTGA