Detailed information of effector
Summary
| Effector ID | EFF00024  |
| Effector type | - |
| Cognate immunity protein | - |
| Related T6SS (Type) | T6SS00016 (Type i5) |
| Strain | Agrobacterium fabrum str. C58 |
| Replicon | chromosome |
| Sequence | Protein sequence (159 a.a.); Nucleotide sequence (477 bp) |
| Description | Hcp |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | ATU_RS20350 |
| Coordinates (Strand) | 1479996..1480472 (+) |
| NCBI ID | 15890638 |
| RefSeq | NC_003063 |
| Uniprot ID | A9CGG8_AGRFC |
| KEGG ID | atu:Atu4345 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 8.8e-33 | 4..133 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-158 | MPIYLQIDGIQGDATHEEHRKWMDIEAIHWNVARNMNTSAGSAANREASEPTISEVILTKVSDSSSTKLFQEACAGRTGKLATIHLVTTGNPGNTYIEYLLTNTLIASYSVDSSGDRPVETIKLNFTKMEVKYTPFDDNNSPQSPMIASYDLATTKAA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9890 | - | - |
Protein sequence: 159 a.a. .
>EFF00024 NC_003063:1479996-1480472 (Unknown) [Agrobacterium fabrum str. C58]
MPIYLQIDGIQGDATHEEHRKWMDIEAIHWNVARNMNTSAGSAANREASEPTISEVILTKVSDSSSTKLFQEACAGRTGK
LATIHLVTTGNPGNTYIEYLLTNTLIASYSVDSSGDRPVETIKLNFTKMEVKYTPFDDNNSPQSPMIASYDLATTKAA*
MPIYLQIDGIQGDATHEEHRKWMDIEAIHWNVARNMNTSAGSAANREASEPTISEVILTKVSDSSSTKLFQEACAGRTGK
LATIHLVTTGNPGNTYIEYLLTNTLIASYSVDSSGDRPVETIKLNFTKMEVKYTPFDDNNSPQSPMIASYDLATTKAA*
Nucleotide sequence: 477 bp .
>EFF00024 NC_003063:1479996-1480472 (Unknown) [Agrobacterium fabrum str. C58]
ATGCCAATTTATCTGCAGATTGACGGTATCCAGGGCGACGCCACCCATGAAGAACATCGCAAGTGGATGGATATTGAAGC
CATTCACTGGAACGTGGCCCGCAACATGAACACGTCGGCTGGTTCTGCTGCAAACCGCGAAGCGTCCGAACCGACCATTT
CGGAAGTCATTCTGACAAAGGTTAGCGACTCGTCTTCCACAAAGCTTTTCCAGGAGGCCTGTGCTGGCCGCACTGGCAAG
CTTGCAACGATTCATCTGGTGACGACCGGCAATCCGGGCAACACCTATATCGAATACCTGCTGACGAACACCCTTATCGC
CAGCTACTCGGTGGATTCCAGCGGGGATCGTCCGGTGGAGACCATCAAGCTCAACTTCACGAAAATGGAAGTGAAGTACA
CGCCGTTCGACGACAACAACTCGCCGCAGTCTCCGATGATCGCTTCCTACGATCTGGCGACGACCAAGGCTGCTTGA
ATGCCAATTTATCTGCAGATTGACGGTATCCAGGGCGACGCCACCCATGAAGAACATCGCAAGTGGATGGATATTGAAGC
CATTCACTGGAACGTGGCCCGCAACATGAACACGTCGGCTGGTTCTGCTGCAAACCGCGAAGCGTCCGAACCGACCATTT
CGGAAGTCATTCTGACAAAGGTTAGCGACTCGTCTTCCACAAAGCTTTTCCAGGAGGCCTGTGCTGGCCGCACTGGCAAG
CTTGCAACGATTCATCTGGTGACGACCGGCAATCCGGGCAACACCTATATCGAATACCTGCTGACGAACACCCTTATCGC
CAGCTACTCGGTGGATTCCAGCGGGGATCGTCCGGTGGAGACCATCAAGCTCAACTTCACGAAAATGGAAGTGAAGTACA
CGCCGTTCGACGACAACAACTCGCCGCAGTCTCCGATGATCGCTTCCTACGATCTGGCGACGACCAAGGCTGCTTGA