Detailed information of immunity protein
Summary
| Immunity protein ID | IMU00054  |
| Cognate effector | EFF01307 |
| Related T6SS (Type) | T6SS00016 (Type i5) |
| Strain | Agrobacterium fabrum str. C58 |
| Replicon | chromosome |
| Sequence | Protein sequence (244 a.a.); Nucleotide sequence (732 bp) |
| Description | Tdi2 |
| Reference | - |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | Atu3639 (Tdi2) |
| Coordinates (Strand) | 691507..692238 (-) |
| NCBI ID | 159185838 |
| RefSeq | NC_003063 |
| Uniprot ID | Q7CSZ3_AGRFC |
| KEGG ID | atu:Atu3639 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GAD-like | PF08887.13 | 2.2e-35 | 13..114 |
| DUF1851 | PF08906.13 | 3.6e-19 | 155..212 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-243 | MVEQPNYNVFETKWIEELLNAYEIDHIVKPSAQIVERYKDRLPEILVKFWIEKGWCSWSKGQYWICDPSIFQPVIDYVFLGDSELDPTRMVAFGYNAFGNVDIWYGDATIRLNLPNGMVRVEPRGYDEGQKRQWTDEVMIGLKLSFNVSPYVAPWEDEKYQNMMPLALERIGQLEPGEIYGFAPALSIGGRNNVEHLQKVKVPEHLLLLASLDSPTLYDYSPPSDGDGSLGAVTPRRKIGSAR |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9975 | - | - |
Protein sequence: 244 a.a. .
>IMU00054 NC_003063:c692238-691507 [Agrobacterium fabrum str. C58]
MVEQPNYNVFETKWIEELLNAYEIDHIVKPSAQIVERYKDRLPEILVKFWIEKGWCSWSKGQYWICDPSIFQPVIDYVFL
GDSELDPTRMVAFGYNAFGNVDIWYGDATIRLNLPNGMVRVEPRGYDEGQKRQWTDEVMIGLKLSFNVSPYVAPWEDEKY
QNMMPLALERIGQLEPGEIYGFAPALSIGGRNNVEHLQKVKVPEHLLLLASLDSPTLYDYSPPSDGDGSLGAVTPRRKIG
SAR*
MVEQPNYNVFETKWIEELLNAYEIDHIVKPSAQIVERYKDRLPEILVKFWIEKGWCSWSKGQYWICDPSIFQPVIDYVFL
GDSELDPTRMVAFGYNAFGNVDIWYGDATIRLNLPNGMVRVEPRGYDEGQKRQWTDEVMIGLKLSFNVSPYVAPWEDEKY
QNMMPLALERIGQLEPGEIYGFAPALSIGGRNNVEHLQKVKVPEHLLLLASLDSPTLYDYSPPSDGDGSLGAVTPRRKIG
SAR*
Nucleotide sequence: 732 bp .
>IMU00054 NC_003063:c692238-691507 [Agrobacterium fabrum str. C58]
ATGGTAGAACAGCCGAACTACAACGTATTTGAAACCAAGTGGATTGAGGAACTCCTCAATGCATACGAAATCGACCACAT
AGTGAAGCCTAGTGCGCAAATAGTAGAGCGCTACAAGGATCGTTTGCCTGAAATTCTGGTAAAATTCTGGATCGAAAAAG
GTTGGTGCAGTTGGTCAAAAGGCCAGTATTGGATATGCGATCCTTCTATATTTCAGCCGGTTATCGACTATGTGTTTCTC
GGTGATTCCGAGCTTGATCCAACGCGCATGGTTGCCTTCGGATACAATGCGTTCGGTAACGTCGATATTTGGTACGGCGA
TGCGACGATACGGTTAAATCTGCCGAACGGCATGGTCCGAGTGGAGCCCCGCGGGTATGACGAAGGTCAAAAGCGCCAAT
GGACCGACGAAGTGATGATTGGTCTTAAATTGTCATTCAACGTCTCTCCATATGTGGCTCCATGGGAAGACGAAAAATAC
CAAAACATGATGCCCTTGGCTCTTGAAAGGATTGGGCAACTTGAACCCGGTGAGATTTATGGTTTCGCCCCTGCACTCAG
TATTGGTGGCCGGAATAATGTCGAACATCTGCAAAAGGTGAAAGTACCGGAACATTTACTTTTGCTGGCTTCACTCGATT
CGCCCACGCTTTATGATTATTCACCGCCAAGCGACGGGGACGGCAGCTTGGGCGCAGTCACTCCACGCAGGAAAATCGGT
TCGGCGAGGTAA
ATGGTAGAACAGCCGAACTACAACGTATTTGAAACCAAGTGGATTGAGGAACTCCTCAATGCATACGAAATCGACCACAT
AGTGAAGCCTAGTGCGCAAATAGTAGAGCGCTACAAGGATCGTTTGCCTGAAATTCTGGTAAAATTCTGGATCGAAAAAG
GTTGGTGCAGTTGGTCAAAAGGCCAGTATTGGATATGCGATCCTTCTATATTTCAGCCGGTTATCGACTATGTGTTTCTC
GGTGATTCCGAGCTTGATCCAACGCGCATGGTTGCCTTCGGATACAATGCGTTCGGTAACGTCGATATTTGGTACGGCGA
TGCGACGATACGGTTAAATCTGCCGAACGGCATGGTCCGAGTGGAGCCCCGCGGGTATGACGAAGGTCAAAAGCGCCAAT
GGACCGACGAAGTGATGATTGGTCTTAAATTGTCATTCAACGTCTCTCCATATGTGGCTCCATGGGAAGACGAAAAATAC
CAAAACATGATGCCCTTGGCTCTTGAAAGGATTGGGCAACTTGAACCCGGTGAGATTTATGGTTTCGCCCCTGCACTCAG
TATTGGTGGCCGGAATAATGTCGAACATCTGCAAAAGGTGAAAGTACCGGAACATTTACTTTTGCTGGCTTCACTCGATT
CGCCCACGCTTTATGATTATTCACCGCCAAGCGACGGGGACGGCAGCTTGGGCGCAGTCACTCCACGCAGGAAAATCGGT
TCGGCGAGGTAA