Detailed information of component protein


Summary

Component ID T6CP259498
Component protein type TssI
T6SS ID (Type) T6SS00016 experimental (Type i5)
Strain Agrobacterium fabrum str. C58
Replicon chromosome linear
Sequence Protein sequence (755 a.a.); Nucleotide sequence (2265 bp)
Reference
[1] Ma LS, Narberhaus F, Lai EM. IcmF family protein TssM exhibits ATPase activity and energizes type VI secretion. J Biol Chem. 2012 May 4;287(19):15610-21. doi: 10.1074/jbc.M111.301630. Epub 2012 Mar 5. PMID: 22393043
[2] Wu HY, Chung PC, Shih HW, et al. Secretome analysis uncovers an Hcp-family protein secreted via a type VI secretion system in Agrobacterium tumefaciens. J Bacteriol. 2008 Apr;190(8):2841-50. doi: 10.1128/JB.01775-07. Epub 2008 Feb 8. PMID: 18263727
[3] Wu CF, Lin JS, Shaw GC, et al. Acid-induced type VI secretion system is regulated by ExoR-ChvG/ChvI signaling cascade in Agrobacterium tumefaciens. PLoS Pathog. 2012 Sep;8(9):e1002938. doi: 10.1371/journal.ppat.1002938. Epub 2012 Sep 27. PMID: 23028331
[4] Lin JS, Ma LS, Lai EM. Systematic dissection of the agrobacterium type VI secretion system reveals machinery and secreted components for subcomplex formation. PLoS One. 2013 Jul 5;8(7):e67647. doi: 10.1371/journal.pone.0067647. Print 2013. PMID: 23861778
[5] Ma LS, Hachani A, Lin JS, et al. Agrobacterium tumefaciens deploys a superfamily of type VI secretion DNase effectors as weapons for interbacterial competition in planta. Cell Host Microbe. 2014 Jul 9;16(1):94-104. doi: 10.1016/j.chom.2014.06.002. Epub 2014 Jun 26. PMID: 24981331
[6] Heckel BC, Tomlinson AD, Morton ER, et al. Agrobacterium tumefaciens exoR controls acid response genes and impacts exopolysaccharide synthesis, horizontal gene transfer, and virulence gene expression. J Bacteriol. 2014 Sep;196(18):3221-33. doi: 10.1128/JB.01751-14. Epub 2014 Jun 30. PMID: 24982308
[7] Lin JS, Wu HH, Hsu PH, et al. Fha interaction with phosphothreonine of TssL activates type VI secretion in Agrobacterium tumefaciens. PLoS Pathog. 2014 Mar 13;10(3):e1003991. doi: 10.1371/journal.ppat.1003991. eCollection 2014 Mar. PMID: 24626341
[8] Heckel BC, Tomlinson AD, Morton ER, et al. Agrobacterium tumefaciens exoR controls acid response genes and impacts exopolysaccharide synthesis, horizontal gene transfer, and virulence gene expression. J Bacteriol. 2014 Sep;196(18):3221-33. doi: 10.1128/JB.01751-14. Epub 2014 Jun 30. PMID: 24982308
[9] Ma LS, Lin JS, Lai EM. An IcmF family protein, ImpLM, is an integral inner membrane protein interacting with ImpKL, and its walker a motif is required for type VI secretion system-mediated Hcp secretion in Agrobacterium tumefaciens. J Bacteriol. 2009 Jul;191(13):4316-29. doi: 10.1128/JB.00029-09. Epub 2009 Apr 24. PMID: 19395482
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) ATU_RS16915
Coordinate (Strand) 694941..697205 (-)
NCBI ID WP_010973210.1
RefSeq NC_003063
Uniprot ID A0A6V7A6K0_RHIRD, Q7CSZ6_AGRFC
KEGG ID atu:Atu3642
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 1.4e-73 36..346
Phage_base_V PF04717.14 2.9e-12 400..467

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-754 MNDQPSSSDFIQASRVLKVSSPLGEDQLLPERLSVEEGVSQLFDIRLTVRAKKEAVKPEELIGRLVDVSIEISQGDGDGGGVRRPFNGLVTELHEGPPITRGMRSYALTIRPQMWLLSRRSDCRIWMDKTAVEIVETLFSEHGIPAPDTSGIISPPPAQHYSVQFNETDLDYLTRRFEEDGLFYWFSHEDGSHKLHVADSASGWLGPSPAAQGEGTVRLAQGSSDRNHINDWARRFSYVSGQRAGADWNFETPGMVPGTMTPSLVQMPDATKRELYEYPARIKTVEEAERAQKLRTQSIEADHDRVFGSSTTRILEAGRRFTPFEVAHPEHAYEEHVIVRASHSIVDLSYETNSNEPEYRNHFEAIPARVPLTPHRSTKRPRIEGTQVAIVAGPEGEEIHPDQYGRIKLWFPWDRKAKKDGTDTCWVRVSQAWGGGTWGAQVIPRIGMEVMVAFVDGDPDKPLVIGVVNNPANSVPYDLPANKTRMVLRSNSHKGDGFNEITFEDEAGKENQFFHAQKDQTTRVLNDRTKRIDRHEVASVGGNRAVEVSGNQKHEIGGSVNTVVGGTGPMAMMAMAGVQALSGQTAGLLSQAAQIAGSGGPGVAAFATTLASSALGFLGAGGLSSREGVVSGPSPRADAGTALAGSGSGVGSDASGLFPLPGIMNTIVSTFKSDSVGVARAEQIGVSKVTNVGQTSLESVGKFKKIAVGEEFVIECGDSKFIMKANGEVIILGKTFNFVATDHFQLRGKPIDLN



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9914 - -



  Protein sequence: 755 a.a.    

>T6CP259498 NC_003063:c697205-694941 [Agrobacterium fabrum str. C58] [TssI]
MNDQPSSSDFIQASRVLKVSSPLGEDQLLPERLSVEEGVSQLFDIRLTVRAKKEAVKPEELIGRLVDVSIEISQGDGDGG
GVRRPFNGLVTELHEGPPITRGMRSYALTIRPQMWLLSRRSDCRIWMDKTAVEIVETLFSEHGIPAPDTSGIISPPPAQH
YSVQFNETDLDYLTRRFEEDGLFYWFSHEDGSHKLHVADSASGWLGPSPAAQGEGTVRLAQGSSDRNHINDWARRFSYVS
GQRAGADWNFETPGMVPGTMTPSLVQMPDATKRELYEYPARIKTVEEAERAQKLRTQSIEADHDRVFGSSTTRILEAGRR
FTPFEVAHPEHAYEEHVIVRASHSIVDLSYETNSNEPEYRNHFEAIPARVPLTPHRSTKRPRIEGTQVAIVAGPEGEEIH
PDQYGRIKLWFPWDRKAKKDGTDTCWVRVSQAWGGGTWGAQVIPRIGMEVMVAFVDGDPDKPLVIGVVNNPANSVPYDLP
ANKTRMVLRSNSHKGDGFNEITFEDEAGKENQFFHAQKDQTTRVLNDRTKRIDRHEVASVGGNRAVEVSGNQKHEIGGSV
NTVVGGTGPMAMMAMAGVQALSGQTAGLLSQAAQIAGSGGPGVAAFATTLASSALGFLGAGGLSSREGVVSGPSPRADAG
TALAGSGSGVGSDASGLFPLPGIMNTIVSTFKSDSVGVARAEQIGVSKVTNVGQTSLESVGKFKKIAVGEEFVIECGDSK
FIMKANGEVIILGKTFNFVATDHFQLRGKPIDLN*

  Nucleotide sequence: 2265 bp    

>T6CP259498 NC_003063:c697205-694941 [Agrobacterium fabrum str. C58] [TssI]
ATGAATGACCAGCCCTCTTCCTCTGACTTCATCCAAGCGAGCCGCGTTCTGAAGGTGTCTTCGCCACTCGGCGAGGATCA
GCTTCTGCCGGAGCGCCTGTCCGTCGAGGAGGGCGTATCGCAGCTCTTCGACATTCGCCTGACCGTGCGAGCCAAGAAGG
AAGCGGTGAAGCCCGAGGAGCTGATCGGACGGCTGGTCGATGTCTCGATCGAGATAAGTCAGGGCGATGGTGATGGCGGC
GGTGTTCGCCGCCCCTTCAACGGCCTGGTGACGGAATTGCATGAAGGGCCGCCGATTACCCGCGGCATGCGCTCCTATGC
GCTGACCATCCGGCCGCAGATGTGGCTGCTGTCGCGCCGCTCCGATTGCCGCATCTGGATGGACAAGACGGCGGTCGAGA
TTGTCGAGACGCTGTTTTCCGAACACGGCATTCCCGCCCCCGATACATCGGGCATCATTTCGCCACCGCCTGCGCAGCAC
TACAGCGTTCAGTTTAACGAGACGGATCTCGATTATCTCACTCGCCGTTTCGAAGAGGACGGCCTGTTTTACTGGTTCAG
CCACGAGGACGGGTCCCACAAGCTGCATGTGGCCGATAGCGCCAGCGGCTGGCTCGGACCATCACCGGCCGCACAGGGCG
AGGGAACGGTGCGCCTGGCGCAGGGCTCGTCGGACCGTAACCACATCAACGACTGGGCGCGACGGTTCTCCTATGTCTCC
GGCCAGCGCGCGGGTGCGGACTGGAATTTCGAGACGCCGGGCATGGTGCCGGGCACAATGACGCCATCGCTGGTGCAGAT
GCCGGATGCGACGAAGCGCGAGCTTTACGAATATCCAGCCCGCATCAAGACGGTGGAAGAGGCCGAGCGGGCGCAGAAAC
TCAGAACCCAGTCCATCGAGGCCGATCATGACCGGGTGTTCGGTTCGTCGACCACGCGCATTCTGGAAGCCGGCCGCCGC
TTTACGCCTTTCGAGGTTGCCCATCCCGAGCATGCCTACGAGGAGCATGTGATCGTGAGGGCAAGCCACAGTATCGTTGA
TCTCTCCTATGAGACAAACAGCAACGAACCGGAGTACCGCAATCACTTCGAGGCAATTCCGGCCCGCGTGCCGCTGACGC
CGCACCGGTCAACCAAACGTCCACGCATCGAGGGCACGCAGGTGGCAATCGTCGCCGGCCCCGAAGGCGAGGAAATCCAT
CCGGATCAATATGGCCGCATCAAGCTGTGGTTCCCGTGGGACCGCAAGGCGAAGAAGGATGGCACGGATACGTGCTGGGT
GCGTGTCAGCCAGGCATGGGGTGGCGGCACATGGGGTGCGCAGGTAATCCCGCGCATCGGCATGGAGGTGATGGTTGCCT
TTGTCGATGGCGACCCGGACAAGCCGCTGGTTATCGGCGTGGTCAACAATCCCGCCAATTCCGTGCCTTACGACCTGCCG
GCCAACAAGACGCGTATGGTGCTGCGCTCCAACAGTCACAAGGGCGACGGTTTCAACGAAATCACCTTCGAAGATGAAGC
CGGCAAGGAGAACCAGTTCTTTCATGCCCAGAAGGACCAGACGACGCGGGTCTTGAACGACCGCACCAAACGCATCGATC
GGCACGAGGTCGCCTCGGTCGGTGGAAATCGGGCCGTCGAGGTTTCCGGCAACCAGAAACACGAGATCGGTGGTTCGGTG
AACACCGTTGTCGGCGGCACTGGCCCGATGGCGATGATGGCGATGGCAGGCGTGCAGGCGCTTTCAGGACAGACCGCTGG
CCTGCTTTCGCAGGCAGCCCAGATCGCCGGCAGCGGTGGTCCTGGTGTCGCGGCCTTTGCCACCACGCTCGCCTCATCCG
CACTCGGCTTTCTTGGTGCGGGCGGACTTTCCTCGCGCGAGGGCGTTGTCTCCGGTCCAAGCCCGCGGGCGGATGCGGGT
ACGGCACTTGCCGGCTCCGGCTCGGGCGTCGGTTCCGATGCCTCGGGCCTCTTTCCGCTGCCGGGCATCATGAACACGAT
CGTCAGTACGTTCAAATCCGATAGCGTCGGTGTGGCGCGGGCTGAACAGATCGGAGTGAGTAAGGTGACCAATGTCGGCC
AGACATCGCTGGAAAGCGTCGGAAAGTTCAAGAAGATTGCCGTCGGTGAAGAGTTTGTCATCGAATGCGGTGATTCCAAA
TTCATCATGAAGGCGAATGGCGAGGTCATCATTCTTGGCAAGACCTTCAACTTCGTGGCGACGGATCATTTTCAGCTTCG
CGGCAAGCCGATCGATCTGAACTGA