Agrobacterium


experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
Regulator ID Locus tag (Gene) Related T6SS Regulator type Regulatory pathway Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Target (Regulation)
REG0077 experimental Atu4335 (Fha/TagH) T6SS00016 experimental protein Tpp Agrobacterium fabrum str. C58 chromosome (NC_003063) 1467064..1468263 (-) 499280697 Unknown (↓)
REG0078 experimental Atu4330 (PpkA) T6SS00016 experimental protein Tpp Agrobacterium fabrum str. C58 chromosome (NC_003063) 1458366..1459271 (-) 737274050 Unknown (↓)
REG0079 experimental Atu4331 (TagF-PppA) T6SS00016 experimental protein Tpp Agrobacterium fabrum str. C58 chromosome (NC_003063) 1459258..1460673 (-) 159186120 Fha (Atu4335) (↑)
REG0080 experimental Atu2091 T6SS00016 experimental protein c-di-GMP regulatory pathway Agrobacterium fabrum str. C58 chromosome (NC_003063) 2054055..2054864 (-) 159185045 the levels of c-di-GMP (↑)
REG0081 experimental Atu5372 T6SS00016 experimental protein c-di-GMP regulatory pathway Agrobacterium fabrum str. C58 chromosome (NC_003064) 363293..364387 (+) 1805892863 the levels of c-di-GMP (↑)
REG0082 experimental Atu1257 (DgcA) T6SS00016 experimental protein c-di-GMP regulatory pathway Agrobacterium fabrum str. C58 chromosome (NC_003062) 1244567..1245814 (-) 159184686 the levels of c-di-GMP (↑)
REG0083 experimental Atu2179 (DgcC) T6SS00016 experimental protein c-di-GMP regulatory pathway Agrobacterium fabrum str. C58 chromosome (NC_003062) 2154605..2155744 (-) 159185090 the levels of c-di-GMP (↑)
REG0084 experimental chvG T6SS00016 experimental protein TCS-HK Agrobacterium fabrum str. C58 chromosome (NC_003062) 34679..36469 (-) chvI (↓)
REG0085 experimental chvI T6SS00016 experimental protein TCS-RR Agrobacterium fabrum str. C58 chromosome (NC_003062) 36525..37250 (-) The intergenic region of the imp and hcp operons (↓)
REG0086 experimental exoR T6SS00016 experimental protein TCS regulatory pathway Agrobacterium fabrum str. C58 chromosome (NC_003062) 1702398..1703192 (-) chvG (↑)

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
Effector ID Locus tag (Gene) Classification Cognate immunity protein Related T6SS Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID
EFF00996 experimental Atu4347 (Tae4) Tae IMU00053 experimental; IMU00192 experimental T6SS00016 experimental Agrobacterium fabrum str. C58 chromosome (NC_003063) 1480980..1481480 (+) 159186127
EFF01852 experimental At1D132_RS21395 (Tae4) Tae T6SS01240 experimental Agrobacterium fabrum strain 1D132 chromosome (NZ_CP033023) 1451466..1451966 (+) 493359403
EFF01857 experimental At1D1108_RS23245 (Tae4) Tae - T6SS01242 experimental Agrobacterium tumefaciens strain 1D1108 chromosome (NZ_CP032922) 2064623..2065123 (+) 503526812
EFF01860 experimental ATU_RS20360 (Tae4) Tae - T6SS01243 experimental Agrobacterium fabrum strain 12D13 chromosome (NZ_CP033035) 1480980..1481480 (+) 493359403
EFF01862 experimental At1D1460_RS28410 (Tae4) Tae - T6SS01244 experimental Agrobacterium tumefaciens strain 1D1460 chromosome (NZ_CP032927) 1466206..1467774 (+) 1815605961
EFF01864 experimental At15955_RS22930 (Tae4) Tae - T6SS01245 experimental Agrobacterium tumefaciens strain 15955 chromosome (NZ_CP032918) 2027347..2027895 (+) 503526804
EFF01866 experimental AtA6_RS23270 (Tae4) Tae - T6SS01246 experimental Agrobacterium tumefaciens strain A6 chromosome (NZ_CP033028) 2028579..2029127 (+) 503526804
EFF01868 experimental At1D1609_RS29810 Tae IMU00350 experimental T6SS01103 experimental Agrobacterium tumefaciens strain 1D1609 chromosome (NZ_CP026925) 1637023..1638591 (+) 1852493397
EFF01308 experimental Atu4350 (Tde1) Tde - T6SS00016 experimental Agrobacterium fabrum str. C58 chromosome (NC_003063) 1484901..1485737 (+) 15890633
EFF01307 experimental Atu3640 (Tde2) Tde IMU00054 experimental T6SS00016 experimental Agrobacterium fabrum str. C58 chromosome (NC_003063) 692241..693821 (-) 15891300
EFF01828 experimental At1D1609_44740 (V2a) Tde - T6SS01103 experimental Agrobacterium tumefaciens strain 1D1609 chromosome (NZ_CP026925) 1637023..1638591 (+) 1349686713
EFF01853 experimental At1D132_RS21410 (Tde1) Tde - T6SS01240 experimental Agrobacterium fabrum strain 1D132 chromosome (NZ_CP033023) 1455387..1456223 (+) 499280706
EFF01855 experimental At12D1_RS23110 (E4) Tde IMU00379 experimental T6SS01241 experimental Agrobacterium tumefaciens strain 12D1 chromosome (NZ_CP033032) 1742752..1743675 (+) 489600126
EFF00024 experimental ATU_RS20350 - - T6SS00016 experimental Agrobacterium fabrum str. C58 chromosome (NC_003063) 1479996..1480472 (+) 15890638
EFF01827 experimental At1D1609_44690 (hcp) - - T6SS01103 experimental Agrobacterium tumefaciens strain 1D1609 chromosome (NZ_CP026925) 1632132..1632608 (+) 1349686708
EFF01843 experimental At1D1609_RS18895 - - T6SS01103 experimental Agrobacterium tumefaciens strain 1D1609 chromosome (NZ_CP026925) 713242..715506 (-) 1150861261
EFF01844 experimental At1D1609_RS22460 - - T6SS01103 experimental Agrobacterium tumefaciens strain 1D1609 chromosome (NZ_CP026925) 1475318..1477582 (+) 1352522504
EFF01845 experimental At1D1609_RS23245 - - T6SS01103 experimental Agrobacterium tumefaciens strain 1D1609 chromosome (NZ_CP026925) 1633633..1635897 (+) 1352522526
EFF01846 experimental At1D1609_RS26290 - - T6SS01103 experimental Agrobacterium tumefaciens strain 1D1609 chromosome (NZ_CP026925) 2295823..2298090 (+) 1352522879
EFF01851 experimental At1D132_RS21385 (Hcp) - - T6SS01240 experimental Agrobacterium fabrum strain 1D132 chromosome (NZ_CP033023) 1450482..1450958 (+) 489600119
EFF01854 experimental At12D1_RS23080 (Hcp) - - T6SS01241 experimental Agrobacterium tumefaciens strain 12D1 chromosome (NZ_CP033032) 1737810..1738286 (+) 489600119
EFF01856 experimental At1D1108_RS23235 (hcp) - - T6SS01242 experimental Agrobacterium tumefaciens strain 1D1108 chromosome (NZ_CP032922) 2063637..2064113 (+) 490566468
EFF01858 experimental At1D1108_RS23280 (E11) - IMU00380 experimental T6SS01242 experimental Agrobacterium tumefaciens strain 1D1108 chromosome (NZ_CP032922) 2072000..2073136 (+) 1421606991
EFF01859 experimental At12D13_RS20965 (Hcp) - T6SS01243 experimental Agrobacterium fabrum strain 12D13 chromosome (NZ_CP033035) 1440824..1441300 (+) 489600119
EFF01861 experimental At1D1460_RS21380 (hcp) - - T6SS01244 experimental Agrobacterium tumefaciens strain 1D1460 chromosome (NZ_CP032927) 1461315..1461791 (+) 489600119
EFF01863 experimental At15955_RS22890 (hcp) - - T6SS01245 experimental Agrobacterium tumefaciens strain 15955 chromosome (NZ_CP032918) 2020110..2020586 (+) 490566468
EFF01865 experimental AtA6_RS23230 (hcp) - - T6SS01246 experimental Agrobacterium tumefaciens strain A6 chromosome (NZ_CP033028) 2021342..2021818 (+) 490566468
EFF01867 experimental At1D1609_RS22470 - - T6SS01103 experimental Agrobacterium tumefaciens strain 1D1609 chromosome (NZ_CP026925) 1478708..1479313 (+) 1349686563

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
ID           Locus tag (Gene) Organism                 Replicon (Accession) Coordinates (Strand) Protein GI Response to T6SS attack Known or putative function

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
Accessory protein ID Locus tag (Gene) Related T6SS Type             Organism                 Replicon (Accession) Coordinates (Strand) Protein GI Related structure protein Related effector
ACP00010 experimental Atu4349 (tap-1) T6SS00016 experimental adaptor Agrobacterium fabrum str. C58 chromosome (NC_003063) 1483948..1484904 (+) 737273750 Atu4348 (VgrG1) Atu4350 (Tde1)
ACP00011 experimental Atu3641 T6SS00016 experimental adaptor Agrobacterium fabrum str. C58 chromosome (NC_003063) 693818..694927 (-) 499279473 Atu3642 (VgrG2) Atu3640 (Tde2)