MGE detailed information
MGE type: Genomic_island MGE length: 43228 bp
Accession: NC_012924 Location: 1874993..1918220 Organism: Streptococcus suis SC84 Replicon: chromosome
Accession: NC_012924 Location: 1874993..1918220 Organism: Streptococcus suis SC84 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SSUSC84_RS09235 (SSUSC84_1782) | 1870935..1874054 | + | 3120 | WP_012775354.1 | LPXTG cell wall anchor domain-containing protein | - |
| SSUSC84_RS09240 (SSUSC84_1783) | 1874134..1875000 | + | 867 | WP_012027852.1 | Hsp33 family molecular chaperone HslO | - |
| SSUSC84_RS09245 (SSUSC84_1784) | 1874993..1875997 | + | 1005 | WP_012775355.1 | tRNA dihydrouridine synthase DusB | - |
| SSUSC84_RS09250 (SSUSC84_1785) | 1876143..1876916 | - | 774 | WP_012027854.1 | NUDIX hydrolase | - |
| SSUSC84_RS09255 (SSUSC84_1786) | 1876909..1877730 | - | 822 | WP_012027855.1 | nicotinamide riboside transporter PnuC | - |
| SSUSC84_RS09260 (SSUSC84_1787) | 1877740..1878777 | - | 1038 | WP_012028524.1 | AAA family ATPase | - |
| SSUSC84_RS09265 (SSUSC84_1788) | 1878891..1881344 | - | 2454 | WP_012027858.1 | ATP-dependent Clp protease ATP-binding subunit ClpC | VF |
| SSUSC84_RS09270 (SSUSC84_1789) | 1881350..1881808 | - | 459 | WP_012027859.1 | transcriptional regulator | - |
| SSUSC84_RS09275 (SSUSC84_1790) | 1881958..1882296 | + | 339 | WP_012027860.1 | thiol reductase thioredoxin | - |
| SSUSC84_RS09280 (SSUSC84_1791) | 1882296..1882997 | + | 702 | WP_012027861.1 | hypothetical protein | - |
| SSUSC84_RS09285 (SSUSC84_1792) | 1883260..1884300 | - | 1041 | WP_012027862.1 | elongation factor Ts | - |
| SSUSC84_RS09290 (SSUSC84_1793) | 1884456..1885232 | - | 777 | WP_012775356.1 | 30S ribosomal protein S2 | - |
| SSUSC84_RS09295 (SSUSC84_1794) | 1885579..1886091 | - | 513 | WP_012027864.1 | adenylate kinase | - |
| SSUSC84_RS09305 (SSUSC84_1795) | 1886745..1891823 | - | 5079 | WP_012775357.1 | S8 family serine peptidase | - |
| SSUSC84_RS09310 (SSUSC84_1796) | 1891967..1892506 | - | 540 | WP_002940254.1 | transcription termination/antitermination protein NusG | - |
| SSUSC84_RS09315 (SSUSC84_1797) | 1892616..1892792 | - | 177 | WP_002940255.1 | preprotein translocase subunit SecE | - |
| SSUSC84_RS09320 (SSUSC84_1798) | 1892802..1892954 | - | 153 | WP_002940258.1 | 50S ribosomal protein L33 | - |
| SSUSC84_RS09325 (SSUSC84_1799) | 1892988..1895201 | - | 2214 | WP_012027868.1 | penicillin-binding protein PBP2A | - |
| SSUSC84_RS09330 (SSUSC84_1800) | 1895354..1896322 | + | 969 | WP_012027869.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| SSUSC84_RS09335 (SSUSC84_1801) | 1896324..1897190 | + | 867 | WP_012027870.1 | RluA family pseudouridine synthase | - |
| SSUSC84_RS09340 (SSUSC84_1802) | 1897217..1898029 | - | 813 | WP_002938438.1 | pur operon repressor | - |
| SSUSC84_RS09345 (SSUSC84_1803) | 1898131..1898997 | - | 867 | WP_012027872.1 | phosphotransferase | - |
| SSUSC84_RS09350 (SSUSC84_1804) | 1898997..1899938 | - | 942 | WP_012775359.1 | 3'-5' exoribonuclease YhaM family protein | - |
| SSUSC84_RS09355 (SSUSC84_1805) | 1899928..1901166 | - | 1239 | WP_012027874.1 | DNA recombination protein RmuC | - |
| SSUSC84_RS09360 (SSUSC84_1806) | 1901167..1901799 | - | 633 | WP_012027875.1 | thiamine diphosphokinase | - |
| SSUSC84_RS09365 (SSUSC84_1807) | 1901792..1902451 | - | 660 | WP_012027876.1 | Ribulose-phosphate 3-epimerase | VF |
| SSUSC84_RS09370 (SSUSC84_1808) | 1902466..1903341 | - | 876 | WP_012027877.1 | ribosome small subunit-dependent GTPase A | - |
| SSUSC84_RS09380 (SSUSC84_1809) | 1904238..1905815 | - | 1578 | WP_012027878.1 | ABC transporter ATP-binding protein/permease | - |
| SSUSC84_RS09385 (SSUSC84_1810) | 1905812..1907059 | - | 1248 | WP_012027879.1 | radical SAM protein | - |
| SSUSC84_RS09390 (SSUSC84_1811) | 1907422..1908285 | - | 864 | WP_012027880.1 | Rgg/GadR/MutR family transcriptional regulator | - |
| SSUSC84_RS09400 (SSUSC84_1813) | 1908775..1911219 | - | 2445 | WP_012027881.1 | alkaline phosphatase family protein | - |
| SSUSC84_RS09405 (SSUSC84_1814) | 1911232..1912962 | - | 1731 | WP_012775361.1 | membrane protein | - |
| SSUSC84_RS09410 (SSUSC84_1815) | 1913327..1914235 | - | 909 | WP_012027884.1 | 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA | - |
| SSUSC84_RS09415 (SSUSC84_1816) | 1914219..1914749 | - | 531 | WP_009910909.1 | DUF1697 domain-containing protein | - |
| SSUSC84_RS09420 (SSUSC84_1817) | 1914763..1915020 | - | 258 | WP_012775363.1 | Txe/YoeB family addiction module toxin | Toxin Detail |
| SSUSC84_RS09425 (SSUSC84_1818) | 1915022..1915282 | - | 261 | WP_002939010.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| SSUSC84_RS09430 (SSUSC84_1819) | 1915358..1915813 | - | 456 | WP_012028534.1 | 8-oxo-dGTP diphosphatase | - |
| SSUSC84_RS09435 (SSUSC84_1820) | 1915820..1916149 | - | 330 | WP_012775364.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| SSUSC84_RS09440 (SSUSC84_1821) | 1916139..1916426 | - | 288 | WP_012028535.1 | hypothetical protein | Antitoxin Detail |
| SSUSC84_RS09445 (SSUSC84_1822) | 1916524..1916892 | - | 369 | WP_012775365.1 | hypothetical protein | - |
| SSUSC84_RS09450 (SSUSC84_1823) | 1916885..1917454 | - | 570 | WP_012775366.1 | ribonuclease M5 | - |
| SSUSC84_RS09455 (SSUSC84_1824) | 1917438..1918220 | - | 783 | WP_012028536.1 | TatD family hydrolase | - |
| SSUSC84_RS09460 (SSUSC84_1825) | 1918327..1918464 | - | 138 | WP_002939016.1 | 50S ribosomal protein L34 | - |
| SSUSC84_RS09465 (SSUSC84_1826) | 1918632..1919627 | - | 996 | WP_012775367.1 | protein jag | - |
| SSUSC84_RS09470 (SSUSC84_1827) | 1919647..1920459 | - | 813 | WP_012027897.1 | YidC/Oxa1 family membrane protein insertase | - |
| SSUSC84_RS09475 (SSUSC84_1828) | 1920443..1920802 | - | 360 | WP_004194560.1 | ribonuclease P protein component | - |
| SSUSC84_RS09480 (SSUSC84_1829) | 1920873..1922267 | - | 1395 | WP_012027899.1 | argininosuccinate lyase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Streptococcus suis strain ZY05719 isolate diseased pig | Genomic island | TA46538, TA46539 | NZ_CP007497 | 1873994..1917221 | 0 | |
| Streptococcus suis P1/7 | Genomic island | TA24001, TA24002 | NC_012925 | 1786584..1829811 | 0 | |
| Streptococcus suis BM407 | Genomic island | TA24009, TA24010 | NC_012926 | 1925244..1968471 | 0 | |
| Streptococcus suis GZ1 | Genomic island | TA27112 | NC_017617 | 1819684..1862910 | 0 | |
| Streptococcus suis JS14 | Genomic island | TA27117, TA27118 | NC_017618 | 1914908..1958146 | 0 | |
| Streptococcus suis SS12 | Genomic island | TA27123, TA27124 | NC_017619 | 1888857..1932575 | 0 | |
| Streptococcus suis A7 | Genomic island | TA27140, TA27141 | NC_017622 | 1817569..1860796 | 0 | |
| Streptococcus suis S735 | Genomic island | TA28234, TA28235 | NC_018526 | 1759893..1803128 | 0 | |
| Streptococcus suis SC070731 | Genomic island | TA29031, TA29032 | NC_020526 | 1917155..1960382 | 0 | |
| Streptococcus suis strain LSM102 | Genomic island | TA64292, TA64293 | NZ_CP016175 | 1847024..1890251 | 0 | |
| Streptococcus suis strain SS2-1 | Genomic island | TA70797, TA70798 | NZ_CP018908 | 1850372..1893599 | 0 | |
| Streptococcus suis strain SC19 | Genomic island | TA75586, TA75587 | NZ_CP020863 | 1875063..1918290 | 0 | |
| Streptococcus suis strain CS100322 | Genomic island | TA86627, TA86628 | NZ_CP024050 | 1916742..1959968 | 0 | |
| Streptococcus suis strain ISU1606 | Genomic island | TA106862, TA106863 | NZ_CP030017 | 1853080..1896307 | 0 | |
| Streptococcus suis strain ISU2714 | Genomic island | TA106875, TA106876 | NZ_CP030022 | 1842970..1886197 | 0 | |
| Streptococcus suis strain 10 | Genomic island | TA167309, TA167310 | NZ_CP058742 | 1821980..1865207 | 0 | |
| Streptococcus suis strain Transconjugant cSS389 | Genomic island | TA214275, TA214276 | NZ_CP082197 | 1839769..1882996 | 0 | |
| Streptococcus suis strain Transconjugant cNJ3 | Genomic island | TA214281, TA214282 | NZ_CP082198 | 1844574..1887801 | 0 | |
| Streptococcus suis strain Transconjugant cFJSM5 | Genomic island | TA214286, TA214287 | NZ_CP082199 | 1840134..1883361 | 0 | |
| Streptococcus suis strain Transconjugant cDY107 | Genomic island | TA214291, TA214292 | NZ_CP082200 | 1842014..1885241 | 0 | |
| Streptococcus suis strain Transconjugant cAKJ18 | Genomic island | TA214297, TA214296 | NZ_CP082201 | 1842566..1885793 | 0 | |
| Streptococcus suis strain SZ1908 | Genomic island | TA215680, TA215681 | NZ_CP082948 | 1916543..1959770 | 0 | |
| Streptococcus suis strain Ssuis_MA1 | Genomic island | TA220440, TA220441 | NZ_CP085088 | 1744538..1787765 | 0 | |
| Streptococcus suis strain LSM157 | Genomic island | TA233291, TA233292 | NZ_CP091422 | 1848223..1891450 | 0 | |
| Streptococcus suis strain LSM29 | Genomic island | TA233296, TA233297 | NZ_CP091423 | 1935442..1978669 | 0 | |
| Streptococcus suis strain TJS56 | Genomic island | TA242044, TA242045 | NZ_CP095463 | 196481..239801 | 0.001 | |
| Streptococcus suis strain M104300_S20 | Genomic island | TA253214, TA253215 | NZ_CP102137 | 1853463..1896690 | 0 | |
| Streptococcus suis strain SS15055_N2_C15 | Genomic island | TA253265, TA253266 | NZ_CP102154 | 1786118..1829346 | 0 | |
| Streptococcus suis strain Transconjugant cSFJ45 | Genomic island | TA254122, TA254123 | NZ_CP102748 | 1870203..1913430 | 0 | |
| Streptococcus suis strain ID38828 | Genomic island | TA262469, TA262470 | NZ_CP109941 | 1853820..1897047 | 0 | |
| Streptococcus suis strain ID35541 | Genomic island | TA262476, TA262477 | NZ_CP109942 | 1875488..1918600 | 0.004 | |
| Streptococcus suis isolate S10 | Genomic island | TA288905, TA288906 | NZ_LR738721 | 1821982..1865209 | 0 | |
| Streptococcus suis strain NCTC10234 | Genomic island | TA292534, TA292535 | NZ_LS483418 | 1763382..1806617 | 0 | |
| Streptococcus suis strain ZY05719 isolate diseased pig | Genomic island | TA46538, TA46539 | NZ_CP007497 | 1873994..1917221 | 0 |