215680

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/YoeB-RelB
Location 1956313..1956832 Replicon chromosome
Accession NZ_CP082948
Organism Streptococcus suis strain SZ1908

Toxin (Protein)


Gene name yoeB Uniprot ID -
Locus tag K8227_RS09570 Protein ID WP_211838284.1
Coordinates 1956313..1956570 (-) Length 86 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID A0A0K2E7Z9
Locus tag K8227_RS09575 Protein ID WP_002939010.1
Coordinates 1956572..1956832 (-) Length 87 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
K8227_RS09555 (K8227_09530) 1952782..1954512 - 1731 WP_012775361.1 membrane protein -
K8227_RS09560 (K8227_09535) 1954877..1955749 - 873 WP_012775362.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
K8227_RS09565 (K8227_09540) 1955769..1956299 - 531 WP_009910909.1 DUF1697 domain-containing protein -
K8227_RS09570 (K8227_09545) 1956313..1956570 - 258 WP_211838284.1 Txe/YoeB family addiction module toxin Toxin
K8227_RS09575 (K8227_09550) 1956572..1956832 - 261 WP_002939010.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
K8227_RS09580 (K8227_09555) 1956908..1957363 - 456 WP_012028534.1 8-oxo-dGTP diphosphatase -
K8227_RS09585 (K8227_09560) 1957370..1957699 - 330 WP_012775364.1 type II toxin-antitoxin system RelE/ParE family toxin -
K8227_RS09590 (K8227_09565) 1957689..1957976 - 288 WP_012028535.1 hypothetical protein -
K8227_RS09595 (K8227_09570) 1958074..1958442 - 369 WP_012775453.1 hypothetical protein -
K8227_RS09600 (K8227_09575) 1958435..1959004 - 570 WP_012775366.1 ribonuclease M5 -
K8227_RS09605 (K8227_09580) 1958988..1959770 - 783 WP_012028536.1 TatD family hydrolase -
K8227_RS09610 (K8227_09585) 1959877..1960014 - 138 WP_002939016.1 50S ribosomal protein L34 -
K8227_RS09615 (K8227_09590) 1960182..1961177 - 996 WP_012775367.1 RNA-binding cell elongation regulator Jag/EloR -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Genomic island - - 1916543..1959770 43227


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-74)


Sequences

Toxin        


Download         Length: 86 a.a.        Molecular weight: 10358.87 Da        Isoelectric Point: 7.2737

>T215680 WP_211838284.1 NZ_CP082948:c1956570-1956313 [Streptococcus suis]
MGIHFTDDAWEDYLYWQGQDKKILKRINKIIQDMQRHPFEGIAKPEPLKYDYQGAWSRRIDAENRLIYMVEADRLCILSL
KDHYR

Download         Length: 258 bp

>T215680 NZ_CP082948:c1956570-1956313 [Streptococcus suis]
ATGGGAATCCATTTTACAGACGACGCCTGGGAAGACTATCTTTATTGGCAGGGTCAGGATAAGAAAATACTGAAGAGAAT
CAATAAGATTATCCAGGATATGCAGCGACATCCTTTTGAAGGCATTGCCAAACCAGAACCTTTGAAGTATGATTATCAAG
GTGCCTGGTCTCGGAGAATTGATGCGGAGAATCGGTTGATTTATATGGTGGAAGCTGATCGGTTGTGCATCCTGTCGCTA
AAGGATCATTATAGGTGA

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9980.36 Da        Isoelectric Point: 5.7134

>AT215680 WP_002939010.1 NZ_CP082948:c1956832-1956572 [Streptococcus suis]
MEAIVYSHFRNHLKDYMKKVNDEFEPLVVVNKNPEEDIVVLSKSEWDSLQETLAVARNTYLSQKVLRGMAKVKTGQTQER
NLIEAD

Download         Length: 261 bp

>AT215680 NZ_CP082948:c1956832-1956572 [Streptococcus suis]
ATGGAAGCTATTGTATATTCCCATTTTCGAAATCACTTAAAGGACTATATGAAAAAGGTCAATGACGAGTTTGAACCTTT
GGTCGTGGTTAATAAAAATCCAGAGGAAGATATTGTTGTACTCTCAAAGAGTGAGTGGGATAGTTTACAAGAAACCCTCG
CTGTTGCTCGGAACACTTATCTGTCTCAAAAAGTCCTACGTGGTATGGCTAAAGTCAAAACGGGACAAACCCAAGAACGA
AACCTGATAGAGGCGGACTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB A0A0K2E7Z9

References