Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | yefM-yoeB (relBE)/YoeB-RelB |
Location | 1890142..1890661 | Replicon | chromosome |
Accession | NZ_CP018908 | ||
Organism | Streptococcus suis strain SS2-1 |
Toxin (Protein)
Gene name | yoeB | Uniprot ID | A0A2K1SXY6 |
Locus tag | BVD85_RS09480 | Protein ID | WP_012775363.1 |
Coordinates | 1890142..1890399 (-) | Length | 86 a.a. |
Antitoxin (Protein)
Gene name | yefM | Uniprot ID | A0A0K2E7Z9 |
Locus tag | BVD85_RS09485 | Protein ID | WP_002939010.1 |
Coordinates | 1890401..1890661 (-) | Length | 87 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
BVD85_RS09465 | 1886611..1888341 | - | 1731 | WP_012775361.1 | membrane protein | - |
BVD85_RS09470 | 1888706..1889614 | - | 909 | WP_012027884.1 | 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA | - |
BVD85_RS09475 | 1889598..1890128 | - | 531 | WP_009910909.1 | DUF1697 domain-containing protein | - |
BVD85_RS09480 | 1890142..1890399 | - | 258 | WP_012775363.1 | Txe/YoeB family addiction module toxin | Toxin |
BVD85_RS09485 | 1890401..1890661 | - | 261 | WP_002939010.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
BVD85_RS09490 | 1890737..1891192 | - | 456 | WP_012028534.1 | 8-oxo-dGTP diphosphatase | - |
BVD85_RS09495 | 1891199..1891528 | - | 330 | WP_012775364.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
BVD85_RS09500 | 1891518..1891805 | - | 288 | WP_012028535.1 | hypothetical protein | - |
BVD85_RS09505 | 1891903..1892271 | - | 369 | WP_012775365.1 | hypothetical protein | - |
BVD85_RS09510 | 1892264..1892833 | - | 570 | WP_012775366.1 | ribonuclease M5 | - |
BVD85_RS09515 | 1892817..1893599 | - | 783 | WP_012028536.1 | TatD family hydrolase | - |
BVD85_RS09520 | 1893706..1893843 | - | 138 | WP_002939016.1 | 50S ribosomal protein L34 | - |
BVD85_RS09525 | 1894011..1895006 | - | 996 | WP_012775367.1 | protein jag | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
inside | Genomic island | - | - | 1850372..1893599 | 43227 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 86 a.a. Molecular weight: 10346.81 Da Isoelectric Point: 7.2737
>T70797 WP_012775363.1 NZ_CP018908:c1890399-1890142 [Streptococcus suis]
MGIHFTDDAWEDYLYWQGQDKKTLKRINKIIQDMQRHPFEGIAKPEPLKYDYQGAWSRRIDAENRLIYMVEADRLCILSL
KDHYR
MGIHFTDDAWEDYLYWQGQDKKTLKRINKIIQDMQRHPFEGIAKPEPLKYDYQGAWSRRIDAENRLIYMVEADRLCILSL
KDHYR
Download Length: 258 bp
>T70797 NZ_CP018908:c1890399-1890142 [Streptococcus suis]
ATGGGAATCCATTTTACAGACGACGCCTGGGAAGACTATCTTTATTGGCAGGGTCAGGATAAGAAAACACTGAAGAGAAT
CAATAAGATTATCCAGGATATGCAGCGACATCCTTTTGAAGGCATTGCCAAACCAGAACCTTTGAAGTATGATTATCAAG
GTGCCTGGTCTCGGAGAATTGATGCGGAGAATCGGTTGATTTATATGGTGGAAGCTGATCGGTTGTGCATCCTGTCGCTA
AAGGATCATTATAGGTGA
ATGGGAATCCATTTTACAGACGACGCCTGGGAAGACTATCTTTATTGGCAGGGTCAGGATAAGAAAACACTGAAGAGAAT
CAATAAGATTATCCAGGATATGCAGCGACATCCTTTTGAAGGCATTGCCAAACCAGAACCTTTGAAGTATGATTATCAAG
GTGCCTGGTCTCGGAGAATTGATGCGGAGAATCGGTTGATTTATATGGTGGAAGCTGATCGGTTGTGCATCCTGTCGCTA
AAGGATCATTATAGGTGA
Antitoxin
Download Length: 87 a.a. Molecular weight: 9980.36 Da Isoelectric Point: 5.7134
>AT70797 WP_002939010.1 NZ_CP018908:c1890661-1890401 [Streptococcus suis]
MEAIVYSHFRNHLKDYMKKVNDEFEPLVVVNKNPEEDIVVLSKSEWDSLQETLAVARNTYLSQKVLRGMAKVKTGQTQER
NLIEAD
MEAIVYSHFRNHLKDYMKKVNDEFEPLVVVNKNPEEDIVVLSKSEWDSLQETLAVARNTYLSQKVLRGMAKVKTGQTQER
NLIEAD
Download Length: 261 bp
>AT70797 NZ_CP018908:c1890661-1890401 [Streptococcus suis]
ATGGAAGCTATTGTATATTCCCATTTTCGAAATCACTTAAAGGACTATATGAAAAAGGTCAATGACGAGTTTGAACCTTT
GGTCGTGGTTAATAAAAATCCAGAGGAAGATATTGTTGTACTCTCAAAGAGTGAGTGGGATAGTTTACAAGAAACCCTCG
CTGTTGCTCGGAACACTTATCTGTCTCAAAAAGTCCTACGTGGTATGGCTAAAGTCAAAACGGGACAAACCCAAGAACGA
AACCTGATAGAGGCGGACTAA
ATGGAAGCTATTGTATATTCCCATTTTCGAAATCACTTAAAGGACTATATGAAAAAGGTCAATGACGAGTTTGAACCTTT
GGTCGTGGTTAATAAAAATCCAGAGGAAGATATTGTTGTACTCTCAAAGAGTGAGTGGGATAGTTTACAAGAAACCCTCG
CTGTTGCTCGGAACACTTATCTGTCTCAAAAAGTCCTACGTGGTATGGCTAAAGTCAAAACGGGACAAACCCAAGAACGA
AACCTGATAGAGGCGGACTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A2K1SXY6 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0K2E7Z9 |