Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | parDE/RelB(antitoxin) |
Location | 1957370..1957976 | Replicon | chromosome |
Accession | NZ_CP082948 | ||
Organism | Streptococcus suis strain SZ1908 |
Toxin (Protein)
Gene name | parE | Uniprot ID | A0A0Z8ZB64 |
Locus tag | K8227_RS09585 | Protein ID | WP_012775364.1 |
Coordinates | 1957370..1957699 (-) | Length | 110 a.a. |
Antitoxin (Protein)
Gene name | parD | Uniprot ID | D5AKB4 |
Locus tag | K8227_RS09590 | Protein ID | WP_012028535.1 |
Coordinates | 1957689..1957976 (-) | Length | 96 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
K8227_RS09555 (K8227_09530) | 1952782..1954512 | - | 1731 | WP_012775361.1 | membrane protein | - |
K8227_RS09560 (K8227_09535) | 1954877..1955749 | - | 873 | WP_012775362.1 | 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA | - |
K8227_RS09565 (K8227_09540) | 1955769..1956299 | - | 531 | WP_009910909.1 | DUF1697 domain-containing protein | - |
K8227_RS09570 (K8227_09545) | 1956313..1956570 | - | 258 | WP_211838284.1 | Txe/YoeB family addiction module toxin | - |
K8227_RS09575 (K8227_09550) | 1956572..1956832 | - | 261 | WP_002939010.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
K8227_RS09580 (K8227_09555) | 1956908..1957363 | - | 456 | WP_012028534.1 | 8-oxo-dGTP diphosphatase | - |
K8227_RS09585 (K8227_09560) | 1957370..1957699 | - | 330 | WP_012775364.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
K8227_RS09590 (K8227_09565) | 1957689..1957976 | - | 288 | WP_012028535.1 | hypothetical protein | Antitoxin |
K8227_RS09595 (K8227_09570) | 1958074..1958442 | - | 369 | WP_012775453.1 | hypothetical protein | - |
K8227_RS09600 (K8227_09575) | 1958435..1959004 | - | 570 | WP_012775366.1 | ribonuclease M5 | - |
K8227_RS09605 (K8227_09580) | 1958988..1959770 | - | 783 | WP_012028536.1 | TatD family hydrolase | - |
K8227_RS09610 (K8227_09585) | 1959877..1960014 | - | 138 | WP_002939016.1 | 50S ribosomal protein L34 | - |
K8227_RS09615 (K8227_09590) | 1960182..1961177 | - | 996 | WP_012775367.1 | RNA-binding cell elongation regulator Jag/EloR | - |
K8227_RS09620 (K8227_09595) | 1961197..1962009 | - | 813 | WP_012027897.1 | YidC/Oxa1 family membrane protein insertase | - |
K8227_RS09625 (K8227_09600) | 1961993..1962352 | - | 360 | WP_004194560.1 | ribonuclease P protein component | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
inside | Genomic island | - | - | 1916543..1959770 | 43227 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 110 a.a. Molecular weight: 12562.52 Da Isoelectric Point: 7.1991
>T215681 WP_012775364.1 NZ_CP082948:c1957699-1957370 [Streptococcus suis]
MEFESYSVILAPAVEKELAVIYAYFSEQFSEEIAKRRIGMIVEALESLQIFPERGFNADNRFGKQIDPPHLTRGYVVGKD
YIALYRVVKNEVRVGHLFATKSDYVKLLK
MEFESYSVILAPAVEKELAVIYAYFSEQFSEEIAKRRIGMIVEALESLQIFPERGFNADNRFGKQIDPPHLTRGYVVGKD
YIALYRVVKNEVRVGHLFATKSDYVKLLK
Download Length: 330 bp
>T215681 NZ_CP110887:c4810379-4809975 [Dickeya solani]
ATGAACATACGGATTTTCAAGTCAACGCTGATCCGTCAACAATTGAGCCAGCAAGAGCTTGATGATTTGGTCGCGGATTT
TCACGCCTATAAGCAGAATGGGGTACTACCGGACACATTTGGGCGTGACGCGCCTTATGATGATGACCGAACCTATCCAT
TAGTAAAAGCAGAGCAGGTGGCTCACATCCACCTTGCCGATGCGGATGCGCCTTTTCCCAGGTTCTTGCGCCAGTTCAAG
AGAACCAGCGATCGGGCCCATTTGGTCTACTGCCAGGGAGCGATGGATCCCGAGGCCTGCCTGTTAATTATTATTTTAAA
ACCCGAAGCCCATAAAATGGCACGCAACAATAACAACATGCACAAGATCGGGATGATGGCCGCTGCGTTCAGGATGAAAT
ATTGA
ATGAACATACGGATTTTCAAGTCAACGCTGATCCGTCAACAATTGAGCCAGCAAGAGCTTGATGATTTGGTCGCGGATTT
TCACGCCTATAAGCAGAATGGGGTACTACCGGACACATTTGGGCGTGACGCGCCTTATGATGATGACCGAACCTATCCAT
TAGTAAAAGCAGAGCAGGTGGCTCACATCCACCTTGCCGATGCGGATGCGCCTTTTCCCAGGTTCTTGCGCCAGTTCAAG
AGAACCAGCGATCGGGCCCATTTGGTCTACTGCCAGGGAGCGATGGATCCCGAGGCCTGCCTGTTAATTATTATTTTAAA
ACCCGAAGCCCATAAAATGGCACGCAACAATAACAACATGCACAAGATCGGGATGATGGCCGCTGCGTTCAGGATGAAAT
ATTGA
Antitoxin
Download Length: 96 a.a. Molecular weight: 10892.43 Da Isoelectric Point: 4.3464
>AT215681 WP_012028535.1 NZ_CP082948:c1957976-1957689 [Streptococcus suis]
MITINKDAQVNFKTDSRLLEKAKEVFAMNQLDLTAGFNLFLQNIAVKNELPILTEEELEREELFLQLQKEIQENQQAIEA
GHGISLESVKEKYGI
MITINKDAQVNFKTDSRLLEKAKEVFAMNQLDLTAGFNLFLQNIAVKNELPILTEEELEREELFLQLQKEIQENQQAIEA
GHGISLESVKEKYGI
Download Length: 288 bp
>AT215681 NZ_CP110887:c4810669-4810376 [Dickeya solani]
ATGGAGCGTATTCTTGCTGAAAAATCTATAAATATTACAGAGTTAAGGAAAAATCCGGCTAAGTATTTTATTGATGAGCC
TGTTGCCGTGCTTTCTAACAACCGGCCCGCCGGTTACATGGTGAGTGCCAAAGTCTTTGAAGAACTGATCGATCTGCTAG
AGGCGAAGCAGGAAACGGTTCATACCGTAGCGCGCTTTAGGCCAACGGCCGAACGTTTACGAGCCCTTGCAGATAGCGGT
CAGAAACTGCTGAATGATGCCTCTGGCAAGGATCTGACTGAGTTCACGGAATGA
ATGGAGCGTATTCTTGCTGAAAAATCTATAAATATTACAGAGTTAAGGAAAAATCCGGCTAAGTATTTTATTGATGAGCC
TGTTGCCGTGCTTTCTAACAACCGGCCCGCCGGTTACATGGTGAGTGCCAAAGTCTTTGAAGAACTGATCGATCTGCTAG
AGGCGAAGCAGGAAACGGTTCATACCGTAGCGCGCTTTAGGCCAACGGCCGAACGTTTACGAGCCCTTGCAGATAGCGGT
CAGAAACTGCTGAATGATGCCTCTGGCAAGGATCTGACTGAGTTCACGGAATGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0Z8ZB64 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0Z9A6F4 |