oriTDB

oriT of wild plasmids | oriT of ICEs | oriT of vectors | oriT of artificial transposons

The oriTDB database collected the information about the ssDNA transfers of Integrative and Conjugative Elements (ICEs), and Integrative and Mobilizable Elements (IMEs). It includes the transfer origin regions (oriT), relaxosomes (mob-coding relaxases and auxiliary DNA-binding proteins) and type IV coupling proteins (T4CP).

Full list

experimental

in_silico

Classification

» Browse » oriTs of genomic islands » Full list

Accessory function of the mobile element

ACC No.	oriT name [Host]	Sequence completeness?	nic site ?	Drug resistance	Heavy-metal resistance	Virulence	Xenobiotic degradation
200001	oriT_Tn916 [Enterococcus faecalis DS16]	intact	TGG\|T
200002	oriT_Tn1549 [Enterococcus faecalis BM4382]	core	RYGCTTG\|C
200003	oriT_ICESt3 [Streptococcus thermophilus CNRZ385]	intact	_
200004	oriT_ICESt1 [Streptococcus thermophilus CNRZ368]	intact	_
200005	oriT_Tn6086 [Enterococcus faecium strain TC 6]	core	_
200006	oriT_ICEBs1 [Bacillus subtilis subsp. subtilis str. 168]	core	_
200007	oriT_Tn5520 (IME) [Bacteroides fragilis LV23]	intact	_
200008	oriT_Tn4555 (IME) [Bacteroides fragilis]	intact	_
200009	oriT_Tn4399 [Bacteroides fragilis TMP230]	intact	_
200010	oriT_NBU1 (IME) [Bacteroides uniformis]	intact	_
200011	oriT_NBU2 (IME) [Bacteroides sp.]	intact	_
200012	oriT_ ICEEc1 [Escherichia coli ECOR31]	intact	GGTTG\|GTCGCG
200013	oriT_ ICEKp1 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]	intact	GGTTG\|GTCGCG
200014	oriT_intD [Dichelobacter nodosus strain C305-1]	intact	_
200015	oriT_ICE_R88B [Mesorhizobium sp. R88B]	core	_
200016	oriT_ICEDdaEch586-1 [Dickeya dadantii Ech586]	intact	GGTTG\|GTCGCG
200017	oriT_ICEEcoED1a-1 [Escherichia coli ED1a]	intact	GGTTG\|GTCGCG
200018	oriT_ICECkoBAA-1 [Citrobacter koseri ATCC BAA-895]	intact	GGTTG\|GTCGCG
200019	oriT_ICEEcoUMN026-1 [Escherichia coli UMN026]	intact	GGTTG\|GTCGCG
200020	oriT_HPI-ICEEh1 [Enterobacter hormaechei 05-545]	intact	GGGTG\|GTCGCG
200021	oriT_ICEKpnHS11286-1 [Klebsiella pneumoniae subsp. pneumoniae HS11286]	intact	GGTTG\|GTCGCG
200022	oriT_Tn5251 [Streptococcus pneumoniae]	intact	TGG\|T
200023	oriT_CTn6002 [Streptococcus cristatus]	intact	TGG\|T
200024	oriT_ICESpnMalM6 [Streptococcus pneumoniae Mal M6]	intact	TGG\|T
200025	oriT_ICESpnH034800032 [Streptococcus pneumoniae H034800032]	intact	TGG\|T
200026	oriT_ICESpn23771 [Streptococcus pneumoniae 23771]	intact	TGG\|T
200027	oriT_ICESpn11930-2 [Streptococcus pneumoniae 11930]	intact	TGG\|T
200028	oriT_ICESpn11928 [Streptococcus pneumoniae 11928]	intact	TGG\|T
200029	oriT_ICESpn9409 [Streptococcus pneumoniae 9409]	intact	TGG\|T
200030	oriT_Tn5397 [Clostridium difficile 630]	intact	TGG\|T
200031	oriT_Tn6009 [Klebsiella pneumoniae strain 41]	intact	TGG\|T
200032	oriT_ICESga43143-1 [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]	intact	TGG\|T
200033	oriT_ICESauST398-1 [Staphylococcus aureus subsp. aureus ST398]	intact	TGG\|T
200034	oriT_Tn925 [Enterococcus faecalis]	intact	TGG\|T
200035	oriT_ICESpaNUF1049 [Streptococcus parauberis NUF1049]	intact	TGG\|T
200036	oriT_ICESag2603VR-1 [Streptococcus agalactiae 2603V/R]	intact	TGG\|T
200037	oriT_ICESpsHKU1003-1 [Staphylococcus pseudintermedius HKU10-03]	intact	TGG\|T
200038	oriT_ICECloUPII95-1 [Mageeibacillus indolicus UPII9-5]	intact	TGG\|T
200039	oriT_ICESsu98HAH33-1 [Streptococcus suis 98HAH33]	intact	TGG\|T
200040	oriT_ICECdiM68-1 [Clostridium difficile M68]	intact	TGG\|T
200041	oriT_ICESorUo5-1 [Streptococcus oralis Uo5]	intact	TGG\|T
200042	oriT_ICESpnCGSP14-1 [Streptococcus pneumoniae CGSP14]	intact	TGG\|T
200043	oriT_Tn6085b [Enterococcus faecium C68]	intact	TGG\|T
200044	oriT_Tn6085a [Enterococcus faecium C68]	intact	TGG\|T
200045	oriT_ICESpnTw19F14-1 [Streptococcus pneumoniae Taiwan19F-14]	intact	TGG\|T
200046	oriT_Tn6003 [Streptococcus pneumoniae Ar4]	intact	TGG\|T
200047	oriT_ICECdiM120-1 [Clostridium difficile M120]	intact	TGG\|T
200048	oriT_ICESpnTCH8341-1 [Streptococcus pneumoniae TCH8431/19A]	intact	TGG\|T
200049	oriT_Tn2010 [Streptococcus pneumoniae 05P294]	intact	TGG\|T
200050	oriT_ICEFal35896-1 [Filifactor alocis ATCC 35896]	intact	TGG\|T
200051	oriT_Tn6084 [Enterococcus faecium?C68]	intact	TGG\|T
200052	oriT_Tn6079 [Uncultured bacterium MID12]	intact	TGG\|T
200053	oriT_ICESpnH19A6-1 [Streptococcus pneumoniae Hungary19A-6]	intact	TGG\|T
200054	oriT_Tn916(RST11) [Staphylococcus rostri RST11]	intact	TGG\|T
200055	oriT_Tn6087 [Streptococcus oralis F.MI.5]	intact	TGG\|T
200056	oriT_SXT(MO10) [Vibrio cholerae O139 MO10]	intact	_
200057	oriT_R391 [Providencia rettgeri]	intact	_
200058	oriT_ICESpuPO1 [Shewanella sp. W3-18-1]	intact	_
200059	oriT_ICEPdaSpa1 [Photobacterium damselae subsp. piscicida PC554.2]	intact	_
200060	oriT_ICEVchVie1 [Vibrio cholerae V21]	intact	_
200061	oriT_ICEVchB33 [Vibrio cholerae B33]	intact	_
200062	oriT_ICEVchMZO3 [Vibrio cholerae Non-O1 7AMOZ]	intact	_
200063	oriT_ICEPmiUSA1 [Proteus mirabilis HI4320]	intact	_
200064	oriT_ICEVchBan5 [Vibrio cholerae Ban5]	intact	_
200065	oriT_ICEVchBan9 [Vibrio cholerae MJ-1236]	intact	_
200066	oriT_ICEVchInd4 [Vibrio cholerae Ind4]	intact	_
200067	oriT_ICEVchInd5 [Vibrio cholerae Ind5]	intact	_
200068	oriT_ICEVchMex1 [Vibrio cholerae Mex1]	intact	_
200069	oriT_ICEVchMoz4 [Vibrio cholerae 8AMOZ]	intact	_
200070	oriT_ICEVchMoz2 [Vibrio cholerae 3AMOZ]	intact	_
200071	oriT_ICEVchMoz6 [Vibrio cholerae 16AMOZ]	intact	_
200072	oriT_ICEVflInd1 [Vibrio fluvialis Ind1]	intact	_
200073	oriT_ICEPalBan1 [Providencia alcalifaciens Ban1]	intact	_
200074	oriT_ICEPmiJpn1 [Proteus mirabilis TUM4660]	intact	_
200075	oriT_SXT(HN1) [Vibrio cholerae O1 biovar El Tor]	intact	_
200076	oriT_SXT(KN14) [Vibrio cholerae O1 biovar El Tor]	intact	_
200077	oriT_ICEVchBan8 [Vibrio cholerae O37 strain MZ03]	intact	_
200078	oriT_ICEVchHai1 [Vibrio cholerae VC1786ICE]	intact	_
200079	oriT_MGIVchHai6 [Vibrio cholera non-01/non-0139 HC-36A1]	intact	_

The oriT was determined experimentally;

The oriT was predicted by bioinformatics method.

Microbial Bioinformatics Group in MML, SJTU

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