 oriTDB accession number | 200021 |
| Name | oriT_ICEKpnHS11286-1  |
Sequence Completeness  | intact |
| oriT length | 250 nt |
| oriT sequence | GCACACCGTCGCAGCCAGGCTATATTTCCCGCCCCGGCGGGGAATATGCCGATTAGGCGC GACCAACCCCTTTAAAGCAGCGTTCCCATTTTTTCGAGCTTGCGAAGAAAAAATAGGCTA AACGCGCGTCTTAAAGGGGTTGGTCGCGCGTAGCGTGCGACGGTGTGCCGCCGTTGACCC CGGGGGTTTTGACGCGACGTTCAGCCGCGACATTACCCCCATGCGACAGGCAATAAGGGC GTCCAGCCCG |
| IR (inverted repeat) | [1-11] [158-168] nt (GCACACCGTCG.. CGACGGTGTGC) [57-75] [131-149] nt (GCGCGACCAACCCCTTTAA..TTAAAGGGGTTGGTCGCGC) |
| Location of nic site | [142-143] nt |
| Conserved sequence flanking the nic site | GGTTG|GTCGCG |
| Note | blastn alignment with the oriT_ ICEKp1 |
Visualization of oriT structure Reference| ID | 26 |
| Element type | _ |
| ICE description | ICEKpnHS11286-1 |
| ICEberg accesion number | 180 |
| GenBank accession number | CP003200.1 |
| Family | ICEKp1 |
| Genome size | 62230 bp |
| Coordinate of oriT [+/-] | 3479641..3479890 [+] |
| Drug resistance | _ |
| Heavy-metal resistance | _ |
| Virulence factor | Yersiniabactin synthesis |
| Xenobiotic degradation | _ |
| Host bacterium [NCBI Taxonomy ID] | Klebsiella pneumoniae subsp. pneumoniae HS11286 [1125630] |
Reference| [1] Bi D et al (2015) Mapping the resistance-associated mobilome of a carbapenem-resistant Klebsiella pneumoniae strain reveals insights into factors shaping these regions and facilitates generation of a 'resistance-disarmed' model organism. J Antimicrob Chemother. 70(10):2770-4. [PMID:26169555] |