Bioinformatics Tools/ Databases used by oriTDB
  • PostgreSQL, an open source relational database management system
  • WU-BLAST, the Washington University improved version of BLAST
Public database, to which oriTDB has a hyperlink path
Other tools or servers of interest
  • DNAMAN, DNA/protein multiple sequence alignment
  • MUSCLE, protein multiple sequence alignment
  • HGT-DB, horizontal gene transfer database
  • ACLAME, a classification of genetic mobile elements
  • PAIDB, pathogenicity island database
  • MobilomeFINDER, in silico and experimental discovery of bacterial genomic islands
  • Dfam, database of repetitive DNA families