oriTDB

oriT of wild plasmids | oriT of ICEs | oriT of vectors | oriT of artificial transposons

The oriTDB database collected the information about the ssDNA transfer of ICEs, including the transfer origin regions (oriT), relaxosomes (mob-coding relaxases and auxiliary DNA-binding proteins) and type IV coupling proteins (T4CP).

Full list

experimental

in_silico

Classification

» Browse » oriTs of genomic islands » in_silico

Accessory function of the mobile element

ACC No.	oriT name [Host]	Sequence completeness?	nic site ?	Drug resistance	Heavy-metal resistance	Virulence	Xenobiotic degradation
200003	oriT_ICESt3 [Streptococcus thermophilus CNRZ385]	intact	_
200004	oriT_ICESt1 [Streptococcus thermophilus CNRZ368]	intact	_
200005	oriT_Tn6086 [Enterococcus faecium strain TC 6]	core	_
200010	oriT_NBU1 (IME) [Bacteroides uniformis]	intact	_
200011	oriT_NBU2 (IME) [Bacteroides sp.]	intact	_
200012	oriT_ ICEEc1 [Escherichia coli ECOR31]	intact	GGTTG\|GTCGCG
200014	oriT_intD [Dichelobacter nodosus strain C305-1]	intact	_
200015	oriT_ICE_R88B [Mesorhizobium sp. R88B]	core	_
200016	oriT_ICEDdaEch586-1 [Dickeya dadantii Ech586]	intact	GGTTG\|GTCGCG
200017	oriT_ICEEcoED1a-1 [Escherichia coli ED1a]	intact	GGTTG\|GTCGCG
200018	oriT_ICECkoBAA-1 [Citrobacter koseri ATCC BAA-895]	intact	GGTTG\|GTCGCG
200019	oriT_ICEEcoUMN026-1 [Escherichia coli UMN026]	intact	GGTTG\|GTCGCG
200020	oriT_HPI-ICEEh1 [Enterobacter hormaechei 05-545]	intact	GGGTG\|GTCGCG
200021	oriT_ICEKpnHS11286-1 [Klebsiella pneumoniae subsp. pneumoniae HS11286]	intact	GGTTG\|GTCGCG
200022	oriT_Tn5251 [Streptococcus pneumoniae]	intact	TGG\|T
200023	oriT_CTn6002 [Streptococcus cristatus]	intact	TGG\|T
200024	oriT_ICESpnMalM6 [Streptococcus pneumoniae Mal M6]	intact	TGG\|T
200025	oriT_ICESpnH034800032 [Streptococcus pneumoniae H034800032]	intact	TGG\|T
200026	oriT_ICESpn23771 [Streptococcus pneumoniae 23771]	intact	TGG\|T
200027	oriT_ICESpn11930-2 [Streptococcus pneumoniae 11930]	intact	TGG\|T
200028	oriT_ICESpn11928 [Streptococcus pneumoniae 11928]	intact	TGG\|T
200029	oriT_ICESpn9409 [Streptococcus pneumoniae 9409]	intact	TGG\|T
200030	oriT_Tn5397 [Clostridium difficile 630]	intact	TGG\|T
200031	oriT_Tn6009 [Klebsiella pneumoniae strain 41]	intact	TGG\|T
200032	oriT_ICESga43143-1 [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]	intact	TGG\|T
200033	oriT_ICESauST398-1 [Staphylococcus aureus subsp. aureus ST398]	intact	TGG\|T
200034	oriT_Tn925 [Enterococcus faecalis]	intact	TGG\|T
200035	oriT_ICESpaNUF1049 [Streptococcus parauberis NUF1049]	intact	TGG\|T
200036	oriT_ICESag2603VR-1 [Streptococcus agalactiae 2603V/R]	intact	TGG\|T
200037	oriT_ICESpsHKU1003-1 [Staphylococcus pseudintermedius HKU10-03]	intact	TGG\|T
200038	oriT_ICECloUPII95-1 [Mageeibacillus indolicus UPII9-5]	intact	TGG\|T
200039	oriT_ICESsu98HAH33-1 [Streptococcus suis 98HAH33]	intact	TGG\|T
200040	oriT_ICECdiM68-1 [Clostridium difficile M68]	intact	TGG\|T
200041	oriT_ICESorUo5-1 [Streptococcus oralis Uo5]	intact	TGG\|T
200042	oriT_ICESpnCGSP14-1 [Streptococcus pneumoniae CGSP14]	intact	TGG\|T
200043	oriT_Tn6085b [Enterococcus faecium C68]	intact	TGG\|T
200044	oriT_Tn6085a [Enterococcus faecium C68]	intact	TGG\|T
200045	oriT_ICESpnTw19F14-1 [Streptococcus pneumoniae Taiwan19F-14]	intact	TGG\|T
200046	oriT_Tn6003 [Streptococcus pneumoniae Ar4]	intact	TGG\|T
200047	oriT_ICECdiM120-1 [Clostridium difficile M120]	intact	TGG\|T
200048	oriT_ICESpnTCH8341-1 [Streptococcus pneumoniae TCH8431/19A]	intact	TGG\|T
200049	oriT_Tn2010 [Streptococcus pneumoniae 05P294]	intact	TGG\|T
200050	oriT_ICEFal35896-1 [Filifactor alocis ATCC 35896]	intact	TGG\|T
200051	oriT_Tn6084 [Enterococcus faecium?C68]	intact	TGG\|T
200052	oriT_Tn6079 [Uncultured bacterium MID12]	intact	TGG\|T
200053	oriT_ICESpnH19A6-1 [Streptococcus pneumoniae Hungary19A-6]	intact	TGG\|T
200054	oriT_Tn916(RST11) [Staphylococcus rostri RST11]	intact	TGG\|T
200055	oriT_Tn6087 [Streptococcus oralis F.MI.5]	intact	TGG\|T
200058	oriT_ICESpuPO1 [Shewanella sp. W3-18-1]	intact	_
200059	oriT_ICEPdaSpa1 [Photobacterium damselae subsp. piscicida PC554.2]	intact	_
200060	oriT_ICEVchVie1 [Vibrio cholerae V21]	intact	_
200061	oriT_ICEVchB33 [Vibrio cholerae B33]	intact	_
200062	oriT_ICEVchMZO3 [Vibrio cholerae Non-O1 7AMOZ]	intact	_
200063	oriT_ICEPmiUSA1 [Proteus mirabilis HI4320]	intact	_
200064	oriT_ICEVchBan5 [Vibrio cholerae Ban5]	intact	_
200065	oriT_ICEVchBan9 [Vibrio cholerae MJ-1236]	intact	_
200066	oriT_ICEVchInd4 [Vibrio cholerae Ind4]	intact	_
200067	oriT_ICEVchInd5 [Vibrio cholerae Ind5]	intact	_
200068	oriT_ICEVchMex1 [Vibrio cholerae Mex1]	intact	_
200069	oriT_ICEVchMoz4 [Vibrio cholerae 8AMOZ]	intact	_
200070	oriT_ICEVchMoz2 [Vibrio cholerae 3AMOZ]	intact	_
200071	oriT_ICEVchMoz6 [Vibrio cholerae 16AMOZ]	intact	_
200072	oriT_ICEVflInd1 [Vibrio fluvialis Ind1]	intact	_
200073	oriT_ICEPalBan1 [Providencia alcalifaciens Ban1]	intact	_
200074	oriT_ICEPmiJpn1 [Proteus mirabilis TUM4660]	intact	_
200075	oriT_SXT(HN1) [Vibrio cholerae O1 biovar El Tor]	intact	_
200076	oriT_SXT(KN14) [Vibrio cholerae O1 biovar El Tor]	intact	_
200077	oriT_ICEVchBan8 [Vibrio cholerae O37 strain MZ03]	intact	_
200078	oriT_ICEVchHai1 [Vibrio cholerae VC1786ICE]	intact	_

The oriT was determined experimentally;

The oriT was predicted by bioinformatics method.

Microbial Bioinformatics Group in MML, SJTU

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