oriTDB
The information of the oriT region
oriTDB accession number 200078
Name oriT_ICEVchHai1  insolico
Sequence Completeness intact
oriT length 299 nt
oriT sequence GCTCTGTTTGGCGGCTGGTGACCTAGCCAAAAAAATTGAGACGCCAAACGTCGTTTGCAT TCTGGCCTGAACTTGCCAAACGGTTTGTATCTTCATGGCGATACGTCTTTTTAGGTGTTT TTAAGTGAAATCAGCCTGTATCCCTTGTCGGGTATGGGATTGAGCGAGTCGATTTATATC GAGACGCCAAACAGTGATTGTGACGGCAGTTTTACGTTTGGCGTTTCGATCCAAAAGCCA AACGGATAGTGGTTTTGGCTTTAGGGGTTAATTGGATGGGGAAATTGGTTTGGTAGAAA
IR (inverted repeat)[178-192] [216-230] nt  (ATCGAGACGCCAAAC..GTTTGGCGTTTCGAT)
Location of nic site _
Conserved sequence flanking the
  nic site
_
Note _
L:178-192;R:216-230
Visualization of oriT structure
Reference
[1] Daccord A et al (2010) Integrating conjugative elements of the SXT/R391 family trigger the excision and drive the mobilization of a new class of Vibrio genomic islands. Mol Microbiol. 78(3):576-88. [PMID:20807202]
 N/A
 N/A
Information of mobile element
ID 86
Element type _
ICE description ICEVchHai1
ICEberg accesion number 442
GenBank accession number JN648379.1
Family SXT/R391
Genome size 97915 bp
Coordinate of oriT  [+/-] 5693..5991 [+]
Drug resistance insolico streptomycin and trimethoprim resistance
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Vibrio cholerae VC1786ICE [666]
Reference
[1] Daccord A et al (2010) Integrating conjugative elements of the SXT/R391 family trigger the excision and drive the mobilization of a new class of Vibrio genomic islands. Mol Microbiol. 78(3):576-88. [PMID:20807202]