 oriTDB accession number | 200019 |
| Name | oriT_ICEEcoUMN026-1  |
Sequence Completeness  | intact |
| oriT length | 250 nt |
| oriT sequence | GCACACCGTCGCAGCCAGGCTATATTTCCCGCCCCGGCGGGGAATATGCCGATTAGGCGC GACCAACCCCTTTAAAGCAGCGTTCCCATTTTTTCGAGCTTGCGAAGAAAAAATAGGCTA AACGCGCGTCTTAAAGGGGTTGGTCGCGCGTAGCGTGCGACGGTGTGCCGCCGTTGACCC CGGGGGTTTTGACGCGACGTTCAGCCGCGACATTACCCCCATGCGACAGGCAATAAGGGC GTCCAGCCCG |
| IR (inverted repeat) | [1-11] [158-168] nt (GCACACCGTCG.. CGACGGTGTGC) [57-75] [131-149] nt (GCGCGACCAACCCCTTTAA..TTAAAGGGGTTGGTCGCGC) |
| Location of nic site | [142-143] nt |
| Conserved sequence flanking the nic site | GGTTG|GTCGCG |
| Note | blastn alignment with the oriT_ ICEKp1 |
Visualization of oriT structure Reference| ID | 24 |
| Element type | _ |
| ICE description | ICEEcoUMN026-1 |
| ICEberg accesion number | 132 |
| GenBank accession number | CU928163.2 |
| Family | ICEKp1 |
| Genome size | 65732 bp |
| Coordinate of oriT [+/-] | 2324734..2324983 [+] |
| Drug resistance | _ |
| Heavy-metal resistance | _ |
| Virulence factor | Yersiniabactin synthesis |
| Xenobiotic degradation | _ |
| Host bacterium [NCBI Taxonomy ID] | Escherichia coli UMN026 [585056] |
Reference