oriTDB

oriT
Relaxosome
T4CP
Element&Host

The information of the oriT region

oriTDB accession number	200015
Name	oriT_ICE_R88B
Sequence Completeness	core
oriT length	40 nt
oriT sequence	GAGGGAGGGCGCGCTTATACGTCGTGCCGACGTGCGTTTT
IR (inverted repeat)	[19-24] [28-33] nt (ACGTCG..CGACGT)
Location of nic site	_
Conserved sequence flanking the nic site	_
Note	_
	L:19-24;R:28-33

Visualization of oriT structure

Reference
N/A

I. Information of Relaxase

ID	229
Name	TraA_ICE_R88B
GenBank accession number	ABM65826
Family	MOB_Q
Length	1016 aa
UniProt ID	A2I7R8
PDB ID	_
Pfam	MobA_MobL [PF03389.14], Evalue: 1.00E-70, Aligned region: 17..216 AAA_30 [PF13604.5], Evalue: 1.10E-54, Aligned region: 351..540 AAA_19 [PF13245.5], Evalue: 1.20E-06, Aligned region: 356..483
Note	conjugal transfer relaxase TraA
Protein sequence [Download]	MAIYHLHVKVIGRKAGSSAVASAAYRSASRLRDERIERSHDFSAKRGVVHSEVMLPERAP EAWRDRERLWNDVEAFEVRKDAQLAREVEFALPRELSKAQGIELARDFVQVEFVSKGMVA DLNVHWDRAEDGSPKPHAHVMLTMRSVDKNGFGAKVRDWNATQLVERWRERWAELANERL AELDIDARIDHRSLEAQGISLEPQTQIGAPAQRIEGGGLDAGEIEADRAELHREIARNNG ARIIADPSVALDAITHQQSTFTRKDIAKFAHRHSDGMEQFNEVVVAISNASDLVELGTDL RGEDRFTTRQMIQTEQRLHRATERMDLDERHAVSDAHREAALARAAQRGLVLSGEQTDAL AHITDGHGLGVVVGFAGTGKSAMLGVARQAWAAAGYEVRGAALSGIAAENLEGGSGISSR TIASMEHSWGQARDLLTTRDVLVIDEAGMVGTRQLERVLSHAADVGAKVVLVGDPQQLQA IEAGAAFRSIHERHGGVEIGQVRRQREVWQRDATRDLATGRIGAAINAYDAQGMVHQAAT RDDARRDLVERWDRDRQAHPEASRIILTHTNDEVRALNQAARERMRAAGDLGDEVQVTVE RGPRNFASGDRVMFLRNERGLGVKNGTLGIVEEVSKQSMTVRTDDDRSVRFELKDYAYVD HGYAATIHKAQGMTVDRTHVLATPGIDAHGSYVALSRHRDGMDLHYGSDDFSTRERLDRS LSRDRAKDMASDYDQIDPAQSYAERRGITFRERVVEIVRRVVPEKLRDRIGGLLDVRSPG DGEPMREGGRGPERENVGAQIGDARPMLVGENLAAGVSRETDTPVDAEAALRSARTKALV RHARALDAVLSTGNADGQGSPDQMRELRDARSAFEKVRSYRWRDAEAAYMKNPELVREAG AGRVSRIVLALQLETEIRTRMDIDPGRRADRFVERWQKLDRTGRQQYQAGDISGYKSARS AMSDMAKSLERDPQLESLLANHKKALGIHVESGRRLGVELAFNHGIGLGRGKGIGI

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome

#	ID	Name	GenBank	Length	Note
1	318	_

N/A

Information of mobile element

ID	20
Element type	_
ICE description	ICE_R88B
ICEberg accesion number	_
GenBank accession number	EF157847.1
Family	_
Genome size	37949 bp
Coordinate of oriT [+/-]	20653..20692
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Mesorhizobium sp. R88B [418407]

Reference

[1] Carlton TM et al (2007) Ferrichrome utilization in a mesorhizobial population: microevolution of a three-locus system. Environ Microbiol. 9(12):2923-32. [PMID:17991023]