oriTDB
The information of the oriT region
oriTDB accession number 200016
Name oriT_ICEDdaEch586-1  insolico
Sequence Completeness intact
oriT length 247 nt
oriT sequence GCACACCGTCAAGCCAGGTGATATTTCCCGCCCCAGCGGGGAATATCACCGATCAGGCGC GACCAACCCCTTTAAAGCAGCGTTCCCGTTTTTTGGAGCTTGCGAGAAAAAACAGGCGAA ACGCGCGTCTTAAAGGGGTTGGTCGCGCGTAGCGGGCGACGGTGTGCCGCCGTTGACGTT GGGGGTTTTGGCGCGGCGTCCAGCCGGAACATTACCCCCATGTGACATTACATAAGGGCG TCCAGCC
IR (inverted repeat)[1-10] [158-167] nt  (GCACACCGTC..GACGGTGTGC)
[57-75] [130-148] nt  (GCGCGACCAACCCCTTTAA..TTAAAGGGGTTGGTCGCGC)
Location of nic site [141-142] nt
Conserved sequence flanking the
  nic site 		GGTTG|GTCGCG
Note blastn alignment with the oriT_ ICEKp1
L:1-10;R:158-167;L:57-75;R:130-148;D:141-142
Visualization of oriT structure
Reference
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Information of mobile element
ID 21
Element type _
ICE description ICEDdaEch586-1
ICEberg accesion number 128
GenBank accession number CP001836.1
Family ICEKp1
Genome size 51067 bp
Coordinate of oriT  [+/-] 3010140..3010386 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Dickeya dadantii Ech586 [590409]
Reference
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Microbial Bioinformatics Group in MML, SJTU