oriTDB
The information of the oriT region
oriTDB accession number 200075
Name oriT_SXT(HN1)  insolico
Sequence Completeness intact
oriT length 299 nt
oriT sequence GCTCTGTTTGGCGGCTGGTGACCTAGCCAAAAAAATTGAGACGCCAAACGTCGTTTGCAT TCTGGCCTGAACTTGCCAAACGGTTTGTATCTTCATGGCGATACGTCTTTTTAGGTGTTT TTAAGTGAAATCAGCCTGTATCCCTTGTCGGGTATGGGATTGAGCGAGTCGATTTATATC GAGACGCCAAACAGTGATTGTGACGGCAGTTTTACGTTTGGCGTTTCGATCCAAAAGCCA AACGGATAGTGGTTTTGGCTTTAGGGGTTAATTGGATGGGGAAATTGGTTTGGTAGAAA
IR (inverted repeat)[178-192] [216-230] nt  (ATCGAGACGCCAAAC..GTTTGGCGTTTCGAT)
Location of nic site _
Conserved sequence flanking the
  nic site 		_
Note _
L:178-192;R:216-230
Visualization of oriT structure
Reference
 N/A
 N/A
 N/A
Information of mobile element
ID 83
Element type _
ICE description SXT(HN1)
ICEberg accesion number 148
GenBank accession number AB450045.1
Family SXT/R391
Genome size _
Coordinate of oriT  [+/-] 2684..2982 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Vibrio cholerae O1 biovar El Tor [686]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU