 oriTDB accession number | 200037 |
| Name | oriT_ICESpsHKU1003-1  |
Sequence Completeness  | intact |
| oriT length | 215 nt |
| oriT sequence | AAGCGGAAGTCGCAGGTGTGGACTGATCTTGCTGGCTGGTGTGGCAATAGCCACGCCAGC ACTTAACCCCCCGTATCTAACAGGGGGGTACAAATCGACAGGAAACAGTCAAAAAAACAT TAGAAAATCCTTTGGTTACAAGGGATTTACAAAATTTCAGCGTATGTCAAATGGGCTTTA AAAGTTGACATACGCCTTTTTGATTGGAGGGATTT |
| IR (inverted repeat) | [61-76] [80-95] nt (ACTTAACCCCCCGTAT..ACAGGGGGGTACAAAT) [123-134] [139-150] nt (GAAAATCCTTTG..CAAGGGATTTAC) |
| Location of nic site | [135-136] nt |
| Conserved sequence flanking the nic site | TGG|T |
| Note | blastn alignment with the oriT_Tn916 |
Visualization of oriT structure Reference| ID | 251 |
| Name | Relaxase_ICESpsHKU1003-1 |
| GenBank accession number | ADV06648 |
| Family | MOBT |
| Length | 401 aa |
| UniProt ID | E8SFV0 |
| PDB ID | _ |
| Pfam | Rep_trans [PF02486.18], Evalue: 3.10E-69, Aligned region: 168..373 HTH_3 [PF01381.21], Evalue: 4.30E-10, Aligned region: 15..62 HTH_31 [PF13560.5], Evalue: 1.10E-06, Aligned region: 11..69 |
| Note | Tn916-associated transcriptional regulator |
| Protein sequence [Download] | MEGFLLNEQTWLQHLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWE ALERFNPDAPLEMLFDYVRIRFPTTDVQQVVENILQLKLSYFLHEDYGFYSYSEHYALGD IFVLCSHELDKGVLVELKGRGCRQFESYLLAQQRSWYEFFMDVLVAGGVMKRLDLAINDK TGILNIPVLTEKCQQEECISVFRSFKSYRSGELVRKEEKECMGNTLYIGSLQSEVYFCIY EKDYEQYKKNDIPIEDAEVKNRFEIRLKNERAYYAVRDLLVYDNPEHTAFKIINRYIRFV DKDDSKPRSDWKLNEEWAWFIGNNRERLKLTTKPEPYSFQRTLNWLSHQVAPTLKVAIKL DEINQTQVVKDILDHAKLTDRHKQILKQQSVKEQDVITTKK |
Reference| # | ID | Name | GenBank | Length | Note |
| 1 | 340 | _ |
| ID | 251 |
| Name | T4CP_ICESpsHKU1003-1 |
| SecReT4 accesion number | _ |
| GenBank accession number | ADV06649 |
| Family | TrwB/TraD |
| Length | 461 |
| UniProt ID | E8SFV1 |
| PDB ID | _ |
| Pfam | FtsK_SpoIIIE [PF01580.17], Evalue: 2.50E-07, Aligned region: 206..313 DUF87 [PF01935.16], Evalue: 4.40E-05, Aligned region: 216..352 |
| Note | Cell division FtsK/SpoIIIE protein |
| Protein sequence [Download] |
Reference| ID | 42 |
| Element type | Tn916-like |
| ICE description | ICESpsHKU1003-1 |
| ICEberg accesion number | 310 |
| GenBank accession number | CP002439.1 |
| Family | Tn916 |
| Genome size | 18031 bp |
| Coordinate of oriT [+/-] | 938841..939055 [-] |
| Drug resistance | tetracycline resistance |
| Heavy-metal resistance | _ |
| Virulence factor | _ |
| Xenobiotic degradation | _ |
| Host bacterium [NCBI Taxonomy ID] | Staphylococcus pseudintermedius HKU10-03 [937773] |
Reference| [1] Tse H et al (2011) Complete genome sequence of the veterinary pathogen Staphylococcus pseudintermedius strain HKU10-03, isolated in a case of canine pyoderma. J Bacteriol. 193(7):1783-4. [PMID:21278300] |