 oriTDB accession number | 200023 |
| Name | oriT_CTn6002  |
Sequence Completeness  | intact |
| oriT length | 215 nt |
| oriT sequence | AAGCGGAAGTCGCAGGTGTGGACTGATCTTGCTGGCTGGTGTGGCAATAGCCACGCCAGC ACTTAACCCCCCGTATCTAACAGGGGGGTACAAATCGACAGGAAACAGTCAAAAAAACAT TAGAAAATCCTTTGGTTACAAGGGATTTACAAAATTTCAGCGTATGTCAAATGGGCTTTA AAAGTTGACATACGCCTTTTTGATTGGAGGGATTT |
| IR (inverted repeat) | [61-76] [80-95] nt (ACTTAACCCCCCGTAT..ACAGGGGGGTACAAAT) [123-134] [139-150] nt (GAAAATCCTTTG..CAAGGGATTTAC) |
| Location of nic site | [135-136] nt |
| Conserved sequence flanking the nic site | TGG|T |
| Note | blastn alignment with the oriT_Tn916 |
Visualization of oriT structure Reference| ID | 237 |
| Name | ORF20_CTn6002 |
| GenBank accession number | AAY63930 |
| Family | MOBT |
| Length | 400 aa |
| UniProt ID | Q3KU49 |
| PDB ID | _ |
| Pfam | Rep_trans [PF02486.18], Evalue: 3.10E-69, Aligned region: 96..301 Omega_Repress [PF07764.10], Evalue: 1.70E-30, Aligned region: 333..392 |
| Note | ORF20F; similar to ORF20 in Tn916, YP_133675, but extended by 72 amino acids |
| Protein sequence [Download] | MLFDYVRIRFPTTDVQQVVENILQLKLSYFLHEDYGFYSYSEHYALGDIFVLCSHELDKG VLVELKGRGCRQFESYLLAQQRSWYEFFMDVLVAGGVMKRLDLAINDKTGILNIPVLTEK CQQEECISVFRSFKSYRSGELVRKEEKECMGNTLYIGSLQSEVYFCIYEKDYEQYKKNDI PIEDAEVKNRFEIRLKNERAYYAVRDLLVYDNPEHTAFKIINRYIRFVDKDDSKPRSDWK LNEEWAWFIGNNRERLKLTTKPEPYSFQRTLNWLSHQVAPTLKVAIKLDEINQTQVVKDI LDHAKLTDRHKQILKQQSVKEQDVITTKKGYLSTIPVDRYPKKDIMGDKTVRVRADLHHI IKIETAKNGGNVKEVMEIRLRSKLKSVLIVHYLKILYNRN |
Reference| # | ID | Name | GenBank | Length | Note |
| 1 | 326 | _ |
| ID | 237 |
| Name | ORF21_CTn6002 |
| SecReT4 accesion number | _ |
| GenBank accession number | AAY63929 |
| Family | TrwB/TraD |
| Length | 461 |
| UniProt ID | Q3KU50 |
| PDB ID | _ |
| Pfam | FtsK_SpoIIIE [PF01580.17], Evalue: 2.50E-07, Aligned region: 206..313 DUF87 [PF01935.16], Evalue: 4.40E-05, Aligned region: 216..352 |
| Note | ORF21; similar to ORF21 in Tn916, YP_133674, and DNA segregation ATPase, FtsK/SpoIIIE family protein, ZP_00285890 |
| Protein sequence [Download] |
Reference| ID | 28 |
| Element type | Tn916-like transposon |
| ICE description | CTn6002 |
| ICEberg accesion number | 62 |
| GenBank accession number | AY898750.1 |
| Family | Tn916 |
| Genome size | 20880 bp |
| Coordinate of oriT [+/-] | 2441..2655 [+] |
| Drug resistance | tetracycline resistance; erythromycin resistance |
| Heavy-metal resistance | _ |
| Virulence factor | _ |
| Xenobiotic degradation | _ |
| Host bacterium [NCBI Taxonomy ID] | Streptococcus cristatus [45634] |
Reference| [1] Warburton PJ et al (2007) Demonstration of in vivo transfer of doxycycline resistance mediated by a novel transposon. J Antimicrob Chemother. 60(5):973-80. [PMID:17855723] |