 oriTDB accession number | 200039 |
| Name | oriT_ICESsu98HAH33-1  |
Sequence Completeness  | intact |
| oriT length | 215 nt |
| oriT sequence | AAGCGGAAGTCGCAGGTGTGGACTGATCTTGCTGGCTGGTGTGGCAATAGCCACGCCAGC ACTTAACCCCCCGTATCTAACAGGGGGGTACAAATCGACAGGAAACAGTCAAAAAAACAT TAGAAAATCCTTTGGTTACAAGGGATTTACAAAATTTCAGCGTATGTCAAATGGGCTTTA AAAGTTGACATACGCCTTTTTGATTGGAGGGATTT |
| IR (inverted repeat) | [61-76] [80-95] nt (ACTTAACCCCCCGTAT..ACAGGGGGGTACAAAT) [123-134] [139-150] nt (GAAAATCCTTTG..CAAGGGATTTAC) |
| Location of nic site | [135-136] nt |
| Conserved sequence flanking the nic site | TGG|T |
| Note | blastn alignment with the oriT_Tn916 |
Visualization of oriT structure Reference| ID | 253 |
| Name | Relaxase_ICESsu98HAH33-1 |
| GenBank accession number | ABP92094 |
| Family | MOBT |
| Length | 401 aa |
| UniProt ID | _ |
| PDB ID | _ |
| Pfam | Rep_trans [PF02486.18], Evalue: 3.10E-69, Aligned region: 168..373 HTH_3 [PF01381.21], Evalue: 4.30E-10, Aligned region: 15..62 HTH_31 [PF13560.5], Evalue: 1.10E-06, Aligned region: 11..69 |
| Note | Tn916, transcriptional regulator, putative |
| Protein sequence [Download] | MEGFLLNEQTWLQHLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWE ALERFNPDAPLEMLFDYVRIRFPTTDVQQVVENILQLKLSYFLHEDYGFYSYSEHYALGD IFVLCSHELDKGVLVELKGRGCRQFESYLLAQQRSWYEFFMDVLVAGGVMKRLDLAINDK TGILNIPVLTEKCQQEECISVFRSFKSYRSGELVRKEEKECMGNTLYIGSLQSEVYFCIY EKDYEQYKKNDIPIEDAEVKNRFEIRLKNERAYYAVRDLLVYDNPEHTAFKIINRYIRFV DKDDSKPRSDWKLNEEWAWFIGNNRERLKLTTKPEPYSFQRTLNWLSHQVAPTLKVAIKL DEINQTQVVKDILDHAKLTDRHKQILKQQSVKEQDVITTKK |
Reference| # | ID | Name | GenBank | Length | Note |
| 1 | 342 | _ |
| ID | 253 |
| Name | T4CP_ICESsu98HAH33-1 |
| SecReT4 accesion number | _ |
| GenBank accession number | ABP92095 |
| Family | TrwB/TraD |
| Length | 461 |
| UniProt ID | _ |
| PDB ID | _ |
| Pfam | FtsK_SpoIIIE [PF01580.17], Evalue: 2.50E-07, Aligned region: 206..313 DUF87 [PF01935.16], Evalue: 4.40E-05, Aligned region: 216..352 |
| Note | _ |
| Protein sequence [Download] |
Reference| ID | 44 |
| Element type | Tn916-like |
| ICE description | ICESsu98HAH33-1 |
| ICEberg accesion number | 313 |
| GenBank accession number | CP000408.1 |
| Family | Tn916 |
| Genome size | 18031 bp |
| Coordinate of oriT [+/-] | 903334..903548 [-] |
| Drug resistance | _ |
| Heavy-metal resistance | _ |
| Virulence factor | _ |
| Xenobiotic degradation | _ |
| Host bacterium [NCBI Taxonomy ID] | Streptococcus suis 98HAH33 [391296] |
Reference| [1] Palmieri C et al (2011) Streptococcus suis, an Emerging Drug-Resistant Animal and Human Pathogen. Front Microbiol. 0.246527778. [PMID:22275909] |
| [2] Chen C et al (2007) A glimpse of streptococcal toxic shock syndrome from comparative genomics of S. suis 2 Chinese isolates. PLoS One. 2(3):e315. [PMID:17375201] |