oriTDB
The information of the oriT region
oriTDB accession number 200058
Name oriT_ICESpuPO1  insolico
Sequence Completeness intact
oriT length 299 nt
oriT sequence GCGCTGTTTGGCGGCGGATGACTGAGCCAAAAAAATCGAGACGCCAAACGTCGTTTGCAT TCTGGCCTGAACTCGCCAAACGGTTTGTATCTTCATGACGATACGTCTTTTTAGGCGTTT TTAAGTGAAATCGGGCTGTATCCCTTGTCAGGTATGGGATTGCGCGAGTTGATTTATATC GAGACGCCAAACAGTGATTGTGACGGTAGTTTTACGTTTGGCGTTTCGATCCAAAAGCCA AACGGATAGTGGTTTTGGCTTTTGGGGTTAATTGGGTGAGGAAATTGGTTTGGTAGAAA
IR (inverted repeat)[178-192] [216-230] nt  (ATCGAGACGCCAAAC..GTTTGGCGTTTCGAT)
Location of nic site _
Conserved sequence flanking the
  nic site
_
Note _
L:178-192;R:216-230
Visualization of oriT structure
Reference
[1] Ceccarelli D et al (2008) Identification of the origin of transfer (oriT) and a new gene required for mobilization of the SXT/R391 family of integrating conjugative elements. J Bacteriol. 190(15):5328-38. [PMID:18539733]
[2] Wozniak RA et al (2009) Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs. PLoS Genet. 5(12):e1000786. [PMID:20041216]
 N/A
 N/A
Information of mobile element
ID 66
Element type _
ICE description ICESpuPO1
ICEberg accesion number 39
GenBank accession number NC_008750.1
Family SXT/R391
Genome size 111191 bp
Coordinate of oriT  [+/-] 1228915..1229213 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Shewanella sp. W3-18-1 [351745]
Reference
[1] Ceccarelli D et al (2008) Identification of the origin of transfer (oriT) and a new gene required for mobilization of the SXT/R391 family of integrating conjugative elements. J Bacteriol. 190(15):5328-38. [PMID:18539733]
[2] Wozniak RA et al (2009) Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs. PLoS Genet. 5(12):e1000786. [PMID:20041216]