 oriTDB accession number | 200032 |
| Name | oriT_ICESga43143-1  |
Sequence Completeness  | intact |
| oriT length | 215 nt |
| oriT sequence | AAGCGGAAGTCGCAGGTGTGGACTGATCTTGCTGGCTGGTGTGGCAATAGCCACGCCAGC ACTTAACCCCCCGTATCTAACAGGGGGGTACAAATCGACAGGAAACAGTCAAAAAAACAT TAGAAAATCCTTTGGTTACAAGGGATTTACAAAATTTCAGCGTATGTCAAATGGGCTTTA AAAGTTGACATACGCCTTTTTGATTGGAGGGATTT |
| IR (inverted repeat) | [61-76] [80-95] nt (ACTTAACCCCCCGTAT..ACAGGGGGGTACAAAT) [123-134] [139-150] nt (GAAAATCCTTTG..CAAGGGATTTAC) |
| Location of nic site | [135-136] nt |
| Conserved sequence flanking the nic site | TGG|T |
| Note | blastn alignment with the oriT_Tn916 |
Visualization of oriT structure Reference| ID | 246 |
| Name | Relaxase_ICESga43143-1 |
| GenBank accession number | BAK28456 |
| Family | MOBT |
| Length | 401 aa |
| UniProt ID | F5WVZ9 |
| PDB ID | _ |
| Pfam | Rep_trans [PF02486.18], Evalue: 3.10E-69, Aligned region: 168..373 HTH_3 [PF01381.21], Evalue: 4.30E-10, Aligned region: 15..62 HTH_31 [PF13560.5], Evalue: 1.10E-06, Aligned region: 11..69 |
| Note | Tn916 ORF20 phage replication initiation factor PEP |
| Protein sequence [Download] | MEGFLLNEQTWLQHLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWE ALERFNPDAPLEMLFDYVRIRFPTTDVQQVVENILQLKLSYFLHEDYGFYSYSEHYALGD IFVLCSHELDKGVLVELKGRGCRQFESYLLAQQRSWYEFFMDVLVAGGVMKRLDLAINDK TGILNIPVLTEKCQQEECISVFRSFKSYRSGELVRKEEKECMGNTLYIGSLQSEVYFCIY EKDYEQYKKNDIPIEDAEVKNRFEIRLKNERAYYAVRDLLVYDNPEHTAFKIINRYIRFV DKDDSKPRSDWKLNEEWAWFIGNNRERLKLTTKPEPYSFQRTLNWLSHQVAPTLKVAIKL DEINQTQVVKDILDHAKLTDRHKQILKQQSVKEQDVITTKK |
Reference| # | ID | Name | GenBank | Length | Note |
| 1 | 335 | _ |
| ID | 246 |
| Name | T4CP_ICESga43143-1 |
| SecReT4 accesion number | _ |
| GenBank accession number | BAK28457 |
| Family | TrwB/TraD |
| Length | 461 |
| UniProt ID | F5WW00 |
| PDB ID | _ |
| Pfam | FtsK_SpoIIIE [PF01580.17], Evalue: 2.50E-07, Aligned region: 206..313 DUF87 [PF01935.16], Evalue: 4.40E-05, Aligned region: 216..352 |
| Note | Tn916 ORF21 FtsK/SpoIIIE family protein |
| Protein sequence [Download] |
Reference| ID | 37 |
| Element type | Tn916-like transposable element |
| ICE description | ICESga43143-1 |
| ICEberg accesion number | 304 |
| GenBank accession number | AP012053.1 |
| Family | Tn916 |
| Genome size | 18032 bp |
| Coordinate of oriT [+/-] | 1658753..1658967 [-] |
| Drug resistance | tetracycline resistance |
| Heavy-metal resistance | _ |
| Virulence factor | _ |
| Xenobiotic degradation | _ |
| Host bacterium [NCBI Taxonomy ID] | Streptococcus gallolyticus subsp. gallolyticus ATCC 43143 [981539] |
Reference| [1] Lin IH et al (2011) Sequencing and comparative genome analysis of two pathogenic Streptococcus gallolyticus subspecies: genome plasticity, adaptation and virulence. PLoS One. 6(5):e20519. [PMID:21633709] |