oriTDB
The information of the oriT region
oriTDB accession number 200052
Name oriT_Tn6079  insolico
Sequence Completeness intact
oriT length 152 nt
oriT sequence AACCCCTCGGTATCTAACAGGGGGGTACAAATCGACAGGAAACAGTCAAAAAAACATTAG AAAATCCTTTGGTTACAAGGGATTTACAAAATTTCAGCGTATGTCAAATGGGCTTTAAAA GTTGACATACGCCTTTTTGATTGGAGGGATTT
IR (inverted repeat)[3-7] [19-23] nt  (CCCCT..AGGGG)
[60-71] [76-87] nt  ( GAAAATCCTTTG..CAAGGGATTTAC)
Location of nic site [72-73]nt
Conserved sequence flanking the
  nic site 		TGG|T
Note blastn alignment with the oriT_Tn916
L:3-7;R:19-23;L:60-71;R:76-87;D:72-73
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 266
Name Relaxase_Tn6079 insolico
GenBank accession number ADH43079
Family MOBT
Length 329 aa
UniProt ID D7PTR9
PDB ID _
Pfam Rep_trans [PF02486.18], Evalue: 1.80E-69, Aligned region: 96..301
Note Tn916 orf20 protein
Protein sequence [Download] MLFDYVRIRFPTTDVQQVVENILQLKLSYFLHEDYGFYSYSEHYALGDIFVLCSHELDKG
VLVELKGRGCRQFESYLLAQQRSWYEFFMDVLVAGGVMKRLDLAINDKTGILNIPVLTEK
CQQEECISVFRSFKSYRSGELVRKEEKECMGNTLYIGSLQSEVYFCIYEKDYEQYKKNDI
PIEDAEVKNRFEIRLKNERAYYAVRDLLVYDNPEHTAFKIINRYIRFVDKDDSKPRSDWK
LNEEWAWFIGNNRERLKLTTKPEPYSFQRTLNWLSHQVAPTLKVAIKLDEINQTQVVKDI
LDHAKLTDRHKQILKQQSVKEQDVITTKK
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
# ID Name GenBank Length Note
1 355 _ insolico
Information of T4CP
ID 266
Name T4CP_Tn6079 insolico
SecReT4 accesion number _
GenBank accession number ADH43077
Family TrwB/TraD
Length 463
UniProt ID D7PTR7
PDB ID _
Pfam FtsK_SpoIIIE [PF01580.17], Evalue: 1.10E-05, Aligned region: 186..316
Note Tn916-like orf21 protein
Protein sequence [Download]

Reference
 N/A
Information of mobile element
ID 57
Element type Tn916-like
ICE description Tn6079
ICEberg accesion number 329
GenBank accession number GU951538.1
Family Tn916
Genome size 28411 bp
Coordinate of oriT  [+/-] 7612..7763 [+]
Drug resistance insolico tetracycline and erythromycin resistanc
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Uncultured bacterium MID12 [764346]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU