oriTDB

The information of the oriT region

oriTDB accession number	200062
Name	oriT_ICEVchMZO3
Sequence Completeness	intact
oriT length	299 nt
oriT sequence	GCTCTGTTTGGCGGCGGATGACTGAGCCAAAAAAATCGAGACGCCAAACGTCGTTTGCAT TATGGCCTGAACTCGCCAAACGGTTTGTATCATCATGACGATACGTCTTTTTAGGCGTTT TTAAGTGAAATCGGCCTGTATCCCTTGTCAGGTATGGGATTGCGCGAGTTGATTTATATC GAGACGCCAAACAGTGATTGTTACGGCAGTTTTACGTTTGGCGTTTCGATCCAAAAGCCA AACGGATAGTGGTTTTGGCTTTTGGGGTTAATTGGATGGGGAAATTGGTTTGGTAGAAA
IR (inverted repeat)	[178-192] [216-230] nt (ATCGAGACGCCAAAC..GTTTGGCGTTTCGAT)
Location of nic site	_
Conserved sequence flanking the nic site	_
Note	_
	L:178-192;R:216-230

Visualization of oriT structure

Reference

[1] Ceccarelli D et al (2008) Identification of the origin of transfer (oriT) and a new gene required for mobilization of the SXT/R391 family of integrating conjugative elements. J Bacteriol. 190(15):5328-38. [PMID:18539733]

N/A

Information of mobile element

ID	70
Element type	_
ICE description	ICEVchMZO3
ICEberg accesion number	26
GenBank accession number	NZ_AAUU01000001
Family	SXT/R391
Genome size	_
Coordinate of oriT [+/-]	33643..33941 [+]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Vibrio cholerae Non-O1 7AMOZ [412883]

Reference

[1] Ceccarelli D et al (2008) Identification of the origin of transfer (oriT) and a new gene required for mobilization of the SXT/R391 family of integrating conjugative elements. J Bacteriol. 190(15):5328-38. [PMID:18539733]