 oriTDB accession number | 200033 |
| Name | oriT_ICESauST398-1  |
Sequence Completeness  | intact |
| oriT length | 215 nt |
| oriT sequence | AAGCGGAAGTCGCAGGTGTGGACTGATCTTGCTGGCTGGTGTGGCAATAGCCACGCCAGC ACTTAACCCCCCGTATCTAACAGGGGGGTACAAATCGACAGGAAACAGTCAAAAAAACAT TAGAAAATCCTTTGGTTACAAGGGATTTACAAAATTTCAGCGTATGTCAAATGGGCTTTA AAAGTTGACATACGCCTTTTTGATTGGAGGGATTT |
| IR (inverted repeat) | [61-76] [80-95] nt (ACTTAACCCCCCGTAT..ACAGGGGGGTACAAAT) [123-134] [139-150] nt (GAAAATCCTTTG..CAAGGGATTTAC) |
| Location of nic site | [135-136] nt |
| Conserved sequence flanking the nic site | TGG|T |
| Note | blastn alignment with the oriT_Tn916 |
Visualization of oriT structure Reference| ID | 247 |
| Name | Relaxase_ICESauST398-1 |
| GenBank accession number | CAQ49392 |
| Family | MOBT |
| Length | 401 aa |
| UniProt ID | D2N5U4 |
| PDB ID | _ |
| Pfam | Rep_trans [PF02486.18], Evalue: 3.10E-69, Aligned region: 168..373 HTH_3 [PF01381.21], Evalue: 4.30E-10, Aligned region: 15..62 HTH_31 [PF13560.5], Evalue: 1.10E-06, Aligned region: 11..69 |
| Note | transcriptional regulator, Cro/CI family |
| Protein sequence [Download] | MEGFLLNEQTWLQHLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWE ALERFNPDAPLEMLFDYVRIRFPTTDVQQVVENILQLQLSYFLHEDYGFYSYSEHYALGD IFVLCSHELDKGVLVELKGRGCRQFESYLLAQQRSWYEFFMDVLVAGGVMKRLDLAINDK TGILNIPVLTEKCQQEECISVFRSFKSYRSGELVRKEEKECMGNTLYIGSLQSEVYFCIY EKDYEQYKKNDIPIEDAEVKNRFEIRLKNERAYYAVRDLLVYDNPEHTAFKIINRYIRFV DKDDSKPRSDWKLNEEWAWFIGNNRERLKLTTKPEPYSFQRTLNWLSHQVAPTLKVAIKL DEINQTQVVKDILDHAKLTDRHKQILKQQSVKEQDVITTKK |
Reference| # | ID | Name | GenBank | Length | Note |
| 1 | 336 | _ |
| ID | 247 |
| Name | T4CP_ICESauST398-1 |
| SecReT4 accesion number | _ |
| GenBank accession number | CAQ49393 |
| Family | TrwB/TraD |
| Length | 461 |
| UniProt ID | D2N5U5 |
| PDB ID | _ |
| Pfam | FtsK_SpoIIIE [PF01580.17], Evalue: 2.50E-07, Aligned region: 206..313 DUF87 [PF01935.16], Evalue: 4.40E-05, Aligned region: 216..352 |
| Note | ftsk/spoiiie family protein |
| Protein sequence [Download] |
Reference| ID | 38 |
| Element type | Tn916-like transposon |
| ICE description | ICESauST398-1 |
| ICEberg accesion number | 305 |
| GenBank accession number | AM990992.1 |
| Family | Tn916 |
| Genome size | 18032 bp |
| Coordinate of oriT [+/-] | 1013148..1013362 [-] |
| Drug resistance | tetracycline resistance |
| Heavy-metal resistance | _ |
| Virulence factor | _ |
| Xenobiotic degradation | _ |
| Host bacterium [NCBI Taxonomy ID] | Staphylococcus aureus subsp. aureus ST398 [523796] |
Reference| [1] Schijffelen MJ et al (2010) Whole genome analysis of a livestock-associated methicillin-resistant Staphylococcus aureus ST398 isolate from a case of human endocarditis. BMC Genomics. 0.719444444. [PMID:20546576] |