 oriTDB accession number | 200067 |
| Name | oriT_ICEVchInd5  |
Sequence Completeness  | intact |
| oriT length | 299 nt |
| oriT sequence | GCTCTGTTTGGCGGCTGGTGACCTAGCCAAAAAAATTGAGACGCCAAACGTCGTTTGCAT TCTGGCCTGAACTTGCCAAACGGTTTGTATCTTCATGGCGATACGTCTTTTTAGGTGTTT TTAAGTGAAATCAGCCTGTATCCCTTGTCGGGTATGGGATTGAGCGAGTCGATTTATATC GAGACGCCAAACAGTGATTGTGACGGCAGTTTTACGTTTGGCGTTTCGATCCAAAAGCCA AACGGATAGTGGTTTTGGCTTTAGGGGTTAATTGGATGGGGAAATTGGTTTGGTAGAAA |
| IR (inverted repeat) | [178-192] [216-230] nt (ATCGAGACGCCAAAC..GTTTGGCGTTTCGAT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site | _ |
| Note | _ |
Visualization of oriT structure Reference| [1] Wozniak RA et al (2009) Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs. PLoS Genet. 5(12):e1000786. [PMID:20041216] |
| ID | 75 |
| Element type | _ |
| ICE description | ICEVchInd5 |
| ICEberg accesion number | 22 |
| GenBank accession number | GQ463142.1 |
| Family | SXT/R391 |
| Genome size | 97952 bp |
| Coordinate of oriT [+/-] | 5730..6028 [+] |
| Drug resistance | Antibiotic resistance genes: floR, strBA, sul2, dfrA1 |
| Heavy-metal resistance | _ |
| Virulence factor | _ |
| Xenobiotic degradation | _ |
| Host bacterium [NCBI Taxonomy ID] | Vibrio cholerae Ind5 [663914] |
Reference| [1] Wozniak RA et al (2009) Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs. PLoS Genet. 5(12):e1000786. [PMID:20041216] |