oriTDB
The information of the oriT region
oriTDB accession number 200067
Name oriT_ICEVchInd5  insolico
Sequence Completeness intact
oriT length 299 nt
oriT sequence GCTCTGTTTGGCGGCTGGTGACCTAGCCAAAAAAATTGAGACGCCAAACGTCGTTTGCAT TCTGGCCTGAACTTGCCAAACGGTTTGTATCTTCATGGCGATACGTCTTTTTAGGTGTTT TTAAGTGAAATCAGCCTGTATCCCTTGTCGGGTATGGGATTGAGCGAGTCGATTTATATC GAGACGCCAAACAGTGATTGTGACGGCAGTTTTACGTTTGGCGTTTCGATCCAAAAGCCA AACGGATAGTGGTTTTGGCTTTAGGGGTTAATTGGATGGGGAAATTGGTTTGGTAGAAA
IR (inverted repeat)[178-192] [216-230] nt  (ATCGAGACGCCAAAC..GTTTGGCGTTTCGAT)
Location of nic site _
Conserved sequence flanking the
  nic site
_
Note _
L:178-192;R:216-230
Visualization of oriT structure
Reference
[1] Wozniak RA et al (2009) Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs. PLoS Genet. 5(12):e1000786. [PMID:20041216]
 N/A
 N/A
Information of mobile element
ID 75
Element type _
ICE description ICEVchInd5
ICEberg accesion number 22
GenBank accession number GQ463142.1
Family SXT/R391
Genome size 97952 bp
Coordinate of oriT  [+/-] 5730..6028 [+]
Drug resistance insolico Antibiotic resistance genes: floR, strBA, sul2, dfrA1
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Vibrio cholerae Ind5 [663914]
Reference
[1] Wozniak RA et al (2009) Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs. PLoS Genet. 5(12):e1000786. [PMID:20041216]