MGE detailed information
MGE type: Conjugative plasmid MGE length: 104399 bp
Accession: NC_023329 Location: 1..104399 Organism: Escherichia coli Replicon: plasmid pIFM3804
Accession: NC_023329 Location: 1..104399 Organism: Escherichia coli Replicon: plasmid pIFM3804
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HTE28_RS00005 (D616_p112129) | 455..1486 | + | 1032 | WP_000907870.1 | plasmid replication initiator RepA | - |
| HTE28_RS00015 | 2509..3717 | - | 1209 | WP_000198533.1 | IS91 family transposase ISSbo1 | Transposase |
| HTE28_RS00020 | 3698..3970 | - | 273 | WP_000019163.1 | hypothetical protein | - |
| HTE28_RS00025 | 4185..5000 | + | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| HTE28_RS00030 | 5087..5329 | + | 243 | Protein_4 | phosphoglucosamine mutase | - |
| HTE28_RS00040 | 5565..7058 | - | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| HTE28_RS00045 | 7170..7475 | - | 306 | WP_001255015.1 | HTH-type transcriptional regulator HdfR | VF |
| HTE28_RS00050 | 7503..8717 | - | 1215 | WP_000214121.1 | Bicyclomycin resistance protein | ARG |
| HTE28_RS00600 | 8934..9818 | - | 885 | WP_001447541.1 | DUF3363 domain-containing protein | - |
| HTE28_RS00060 | 9849..10994 | - | 1146 | Protein_9 | IS91 family transposase ISVsa3 | Transposase |
| HTE28_RS00065 (D616_p112128) | 11352..11621 | + | 270 | WP_000079941.1 | type II toxin-antitoxin system antitoxin YacA | - |
| HTE28_RS00070 (D616_p112127) | 11621..11899 | + | 279 | WP_244442846.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| HTE28_RS00075 (D616_p112126) | 11939..12787 | + | 849 | WP_021265674.1 | 3'-5' exonuclease | - |
| HTE28_RS00080 (D616_p112125) | 12928..13377 | + | 450 | WP_001236003.1 | hypothetical protein | - |
| HTE28_RS00085 (D616_p112122) | 13854..14120 | - | 267 | WP_000955263.1 | hypothetical protein | - |
| HTE28_RS00090 (D616_p112121) | 14120..14614 | - | 495 | WP_001459505.1 | hypothetical protein | - |
| HTE28_RS00095 (D616_p112120) | 14670..15272 | - | 603 | WP_000517695.1 | ProQ/FINO family protein | - |
| HTE28_RS00100 (D616_p112118) | 15626..16972 | + | 1347 | WP_001132032.1 | protein YagA | - |
| HTE28_RS00105 (D616_p112116) | 17251..19131 | + | 1881 | WP_001283341.1 | colicin Ia central receptor-binding domain-containing protein | - |
| HTE28_RS00110 (D616_p112115) | 19149..19496 | - | 348 | WP_000762570.1 | colicin 1B immunity protein | - |
| HTE28_RS00115 (D616_p112113) | 19615..19962 | + | 348 | WP_001407239.1 | DUF6404 family protein | - |
| HTE28_RS00120 | 19982..20572 | - | 591 | WP_000194553.1 | hypothetical protein | - |
| HTE28_RS00125 | 20572..20829 | - | 258 | WP_000371888.1 | hypothetical protein | - |
| HTE28_RS00130 (D616_p112110) | 21180..22181 | + | 1002 | WP_000774874.1 | DUF4238 domain-containing protein | - |
| HTE28_RS00135 | 23499..24425 | - | 927 | WP_001290416.1 | hypothetical protein | - |
| HTE28_RS00140 (D616_p112102) | 24956..25369 | + | 414 | WP_000465043.1 | hypothetical protein | - |
| HTE28_RS00145 (D616_p112101) | 25371..26150 | + | 780 | WP_021265673.1 | site-specific integrase | - |
| HTE28_RS00150 (D616_p112100) | 26330..26974 | + | 645 | WP_001144036.1 | ParA family protein | - |
| HTE28_RS00155 (D616_p112099) | 27061..27369 | + | 309 | WP_000030199.1 | hypothetical protein | - |
| HTE28_RS00160 (D616_p112098) | 27783..28763 | + | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| HTE28_RS00165 (D616_p112097) | 28756..29172 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| HTE28_RS00170 (D616_p112096) | 29174..30448 | - | 1275 | WP_000457492.1 | Y-family DNA polymerase | - |
| HTE28_RS00175 (D616_p112095) | 30448..30885 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HTE28_RS00180 (D616_p112094) | 30882..31130 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| HTE28_RS00185 (D616_p112092) | 31548..32450 | + | 903 | WP_072748703.1 | DUF1281 domain-containing protein | - |
| HTE28_RS00190 | 32454..32759 | + | 306 | WP_015058890.1 | hypothetical protein | - |
| HTE28_RS00195 (D616_p112090) | 32835..33518 | + | 684 | WP_030003447.1 | DNA methylase | - |
| HTE28_RS00200 (D616_p112089) | 33519..33740 | + | 222 | WP_001104885.1 | hypothetical protein | - |
| HTE28_RS00205 (D616_p112088) | 33721..34187 | + | 467 | Protein_38 | DUF1380 family protein | - |
| HTE28_RS00210 (D616_p112087) | 34238..35008 | + | 771 | WP_001434682.1 | hypothetical protein | - |
| HTE28_RS00215 (D616_p112085) | 35425..35850 | + | 426 | WP_001198928.1 | antirestriction protein | - |
| HTE28_RS00220 (D616_p112084) | 35897..36319 | + | 423 | WP_000271734.1 | DUF1380 family protein | - |
| HTE28_RS00225 | 36316..36507 | + | 192 | WP_031942274.1 | hypothetical protein | - |
| HTE28_RS00230 | 36840..36908 | - | 69 | Protein_43 | pilus protein | - |
| HTE28_RS00235 (D616_p112083) | 37277..37804 | + | 528 | WP_029391983.1 | single-stranded DNA-binding protein | - |
| HTE28_RS00240 (D616_p112082) | 37862..38095 | + | 234 | WP_021534894.1 | DUF905 domain-containing protein | - |
| HTE28_RS00245 (D616_p112081) | 38159..40117 | + | 1959 | WP_030003449.1 | ParB/RepB/Spo0J family partition protein | - |
| HTE28_RS00250 (D616_p112080) | 40172..40606 | + | 435 | WP_001535709.1 | conjugation system SOS inhibitor PsiB | - |
| HTE28_RS00255 (D616_p112079) | 40603..41322 | + | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| HTE28_RS00260 (D616_p112078) | 41319..41915 | + | 597 | WP_030003450.1 | hypothetical protein | - |
| HTE28_RS00265 (D616_p112077) | 42378..42878 | + | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| HTE28_RS00270 (D616_p112073) | 43607..44041 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| HTE28_RS00275 (D616_p112072) | 44135..44401 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| HTE28_RS00280 (D616_p112071) | 44466..45368 | + | 903 | WP_030003452.1 | ISNCY family transposase ISRor2 | VF |
| HTE28_RS00285 (D616_p112070) | 45368..45625 | + | 258 | WP_016231861.1 | hypothetical protein | VF |
| HTE28_RS00290 (D616_p112069) | 45656..45907 | - | 252 | WP_000148285.1 | helix-turn-helix transcriptional regulator | - |
| HTE28_RS00295 (D616_p112068) | 45941..46243 | - | 303 | WP_030003453.1 | hypothetical protein | - |
| HTE28_RS00300 (D616_p112067) | 46487..47335 | + | 849 | WP_001077047.1 | DUF4942 domain-containing protein | - |
| HTE28_RS00305 (D616_p112066) | 47420..47755 | - | 336 | WP_000157098.1 | hypothetical protein | - |
| HTE28_RS00310 (D616_p112064) | 47989..48321 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| HTE28_RS00315 (D616_p112063) | 48332..51031 | + | 2700 | WP_001306778.1 | hypothetical protein | Relaxase |
| HTE28_RS00320 (D616_p112062) | 51068..53359 | - | 2292 | WP_001289276.1 | F-type conjugative transfer protein TrbC | - |
| HTE28_RS00325 (D616_p112061) | 53352..54422 | - | 1071 | WP_000151582.1 | IncI1-type conjugal transfer protein TrbB | - |
| HTE28_RS00330 (D616_p112060) | 54441..55649 | - | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| HTE28_RS00335 (D616_p112058) | 55941..56093 | + | 153 | WP_001331364.1 | Hok/Gef family protein | Toxin Detail |
| HTE28_RS00340 (D616_p112057) | 56165..56416 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| HTE28_RS00620 | 56914..57009 | + | 96 | WP_001303310.1 | DinQ-like type I toxin DqlB | - |
| HTE28_RS00345 (D616_p112055) | 57074..57250 | - | 177 | WP_001054904.1 | hypothetical protein | - |
| HTE28_RS00350 (D616_p112053) | 57641..57850 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| HTE28_RS00355 (D616_p112052) | 57922..58404 | - | 483 | WP_001672078.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| HTE28_RS00360 (D616_p112051) | 58645..60813 | - | 2169 | WP_021265679.1 | DotA/TraY family protein | - |
| HTE28_RS00365 (D616_p112050) | 60910..61494 | - | 585 | WP_001037987.1 | IncI1-type conjugal transfer protein TraX | - |
| HTE28_RS00370 (D616_p112049) | 61523..62725 | - | 1203 | WP_001189160.1 | IncI1-type conjugal transfer protein TraW | - |
| HTE28_RS00375 (D616_p112048) | 62692..63306 | - | 615 | WP_000337398.1 | IncI1-type conjugal transfer protein TraV | - |
| HTE28_RS00380 (D616_p112047) | 63306..66350 | - | 3045 | WP_021265678.1 | IncI1-type conjugal transfer protein TraU | - |
| HTE28_RS00385 (D616_p112046) | 66440..67240 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| HTE28_RS00390 (D616_p112045) | 67224..67412 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| HTE28_RS00395 (D616_p112044) | 67476..67880 | - | 405 | WP_000086958.1 | IncI1-type conjugal transfer protein TraR | - |
| HTE28_RS00400 (D616_p112043) | 67931..68458 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| HTE28_RS00405 (D616_p112042) | 68458..69162 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| HTE28_RS00410 (D616_p112041) | 69162..70451 | - | 1290 | WP_001272003.1 | conjugal transfer protein TraO | - |
| HTE28_RS00415 (D616_p112040) | 70454..71437 | - | 984 | WP_001191877.1 | hypothetical protein | VF |
| HTE28_RS00420 (D616_p112039) | 71448..72140 | - | 693 | WP_000138550.1 | DotI/IcmL family type IV secretion protein | - |
| HTE28_RS00425 (D616_p112038) | 72137..72484 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| HTE28_RS00430 (D616_p112037) | 72502..76269 | - | 3768 | WP_001141527.1 | LPD7 domain-containing protein | - |
| HTE28_RS00435 (D616_p112036) | 76358..76909 | - | 552 | WP_000014583.1 | Phospholipase D | VF |
| HTE28_RS00440 (D616_p112035) | 76924..77214 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| HTE28_RS00445 (D616_p112034) | 77211..78359 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| HTE28_RS00450 (D616_p112033) | 78356..79174 | - | 819 | WP_000646098.1 | hypothetical protein | VF |
| HTE28_RS00455 (D616_p112032) | 79171..79629 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| HTE28_RS00460 (D616_p112030) | 80024..80608 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| HTE28_RS00465 (D616_p112029) | 80668..81870 | - | 1203 | WP_000976351.1 | conjugal transfer protein TraF | - |
| HTE28_RS00470 (D616_p112028) | 81955..82779 | - | 825 | WP_001238939.1 | conjugal transfer protein TraE | - |
| HTE28_RS00475 (D616_p112027) | 82930..84084 | - | 1155 | WP_001139957.1 | site-specific integrase | - |
| HTE28_RS00610 | 84068..84367 | + | 300 | WP_223873359.1 | pilus assembly protein PilV | - |
| HTE28_RS00485 (D616_p112023) | 84878..86140 | + | 1263 | WP_000608644.1 | IS1380 family transposase ISEcp1 | Transposase |
| HTE28_RS00490 (D616_p112021) | 86428..87303 | + | 876 | WP_013188473.1 | Beta-lactamase CTX-M-1 | ARG |
| HTE28_RS00495 | 87350..87694 | - | 345 | Protein_97 | WbuC family cupin fold metalloprotein | - |
| HTE28_RS00615 | 87694..87903 | + | 210 | Protein_98 | hypothetical protein | - |
| HTE28_RS00505 (D616_p112017) | 88397..89821 | - | 1425 | WP_001389385.1 | hypothetical protein | VF |
| HTE28_RS00510 | 89821..90477 | - | 657 | WP_001193553.1 | hypothetical protein | VF |
| HTE28_RS00515 | 90462..91022 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| HTE28_RS00520 (D616_p112016) | 91032..91646 | - | 615 | WP_000959785.1 | hypothetical protein | VF |
| HTE28_RS00525 (D616_p112015) | 91664..92761 | - | 1098 | WP_001208805.1 | hypothetical protein | VF |
| HTE28_RS00530 (D616_p112014) | 92774..94327 | - | 1554 | WP_000362202.1 | hypothetical protein | VF |
| HTE28_RS00535 (D616_p112013) | 94338..94790 | - | 453 | WP_001247334.1 | hypothetical protein | VF |
| HTE28_RS00540 (D616_p112012) | 94777..96072 | - | 1296 | WP_000752772.1 | hypothetical protein | VF |
| HTE28_RS00545 (D616_p112011) | 96065..97747 | - | 1683 | WP_000748143.1 | hypothetical protein | VF |
| HTE28_RS00550 (D616_p112010) | 97761..98198 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| HTE28_RS00555 (D616_p112009) | 98198..99265 | - | 1068 | WP_001302629.1 | hypothetical protein | VF |
| HTE28_RS00560 | 99983..100255 | + | 273 | WP_159372940.1 | hypothetical protein | - |
| HTE28_RS00565 (D616_p112008) | 100361..100660 | - | 300 | WP_001387474.1 | PilI type IV pilus biogenesis protein | - |
| HTE28_RS00570 (D616_p112007) | 100777..101328 | - | 552 | WP_000744644.1 | hypothetical protein | - |
| HTE28_RS00575 (D616_p112006) | 101501..102184 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| HTE28_RS00580 (D616_p112004) | 102438..102971 | - | 534 | WP_001372168.1 | transcription termination/antitermination NusG family protein | - |
| HTE28_RS00585 (D616_p112002) | 103413..103700 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| HTE28_RS00590 | 103618..103848 | - | 231 | WP_228772074.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli PCN061 | Conjugative plasmid | TA45354, TA45355 | NZ_CP006641 | 1..103644 | 0.005 | |
| Escherichia coli strain 13KWH46 | Conjugative plasmid | TA71997, TA71998 | NZ_CP019252 | 1..123053 | 0.006 | |
| Escherichia coli strain CFS3313 | Conjugative plasmid | TA96767, TA96768 | NZ_CP026941 | 1..111813 | 0.008 | |
| Escherichia coli strain HB37 | Conjugative plasmid | TA155995, TA155996, TA155997 | NZ_CP053081 | 1..103328 | 0.008 | |
| Escherichia coli isolate 2-101 | Conjugative plasmid | TA157815, TA157816 | NZ_CP053786 | 1..108661 | 0.006 | |
| Escherichia coli isolate J31 | Conjugative plasmid | TA157841, TA157842 | NZ_CP053788 | 1..108661 | 0.006 | |
| Escherichia coli strain Res13-Sevr-PER07-33 | Conjugative plasmid | TA176658, TA176659 | NZ_CP062812 | 1..109586 | 0.007 | |
| Escherichia coli O167:H26 strain Res13-Lact-PER13-34 | Conjugative plasmid | TA176733, TA176734 | NZ_CP062825 | 1..109586 | 0.007 | |
| Escherichia coli strain Res13-Lact-PEB14-36 | Conjugative plasmid | TA176920, TA176921 | NZ_CP062862 | 1..112076 | 0.007 | |
| Escherichia coli O39:H21 strain Res13-Lact-PEB08-01 | Conjugative plasmid | TA176979, TA176980 | NZ_CP062866 | 1..109586 | 0.007 | |
| Escherichia coli strain Res13-Lact-PEB01-20 | Conjugative plasmid | TA177024, TA177025 | NZ_CP062869 | 1..112549 | 0.008 | |
| Escherichia coli strain Res13-Lact-PEA14-20 | Conjugative plasmid | TA177062, TA177063 | NZ_CP062873 | 1..110363 | 0.007 | |
| Escherichia coli O157:H16 strain Res13-Lact-PEA12-26 | Conjugative plasmid | TA177093, TA177094 | NZ_CP062877 | 1..109586 | 0.007 | |
| Escherichia coli O100:H21 strain Res13-Lact-ER07-18 | Conjugative plasmid | TA177176, TA177177 | NZ_CP062892 | 1..109586 | 0.007 | |
| Escherichia coli O152:H23 strain Res13-Lact-ER01-35 | Conjugative plasmid | TA177243, TA177244 | NZ_CP062903 | 1..112293 | 0.008 | |
| Escherichia coli strain Res13-Lact-EB12-05 | Conjugative plasmid | TA177248, TA177249 | NZ_CP062907 | 1..112076 | 0.007 | |
| Escherichia coli O112ab:H8 strain Res13-Lact-EA06-22 | Conjugative plasmid | TA177298, TA177299 | NZ_CP062913 | 1..110368 | 0.007 | |
| Escherichia coli strain EC1722-1 | Conjugative plasmid | TA212721, TA212722 | NZ_CP081194 | 1..105553 | 0.009 | |
| Escherichia coli strain KFu022 | Conjugative plasmid | TA234482, TA234483 | NZ_CP091678 | 1..108771 | 0.006 | |
| Escherichia coli strain LH50-c | Conjugative plasmid | TA250695, TA250696 | NZ_CP100502 | 1..112293 | 0.009 | |
| Escherichia coli strain LH09-a | Conjugative plasmid | TA250844, TA250845 | NZ_CP100546 | 1..112664 | 0.009 | |
| Escherichia coli strain 573 | Conjugative plasmid | TA254316, TA254317, TA254318 | NZ_CP102856 | 1..114525 | 0.008 | |
| Escherichia coli strain C012_chr | Conjugative plasmid | TA274245, TA274249 | NZ_CP119580 | 1..106531 | 0.007 | |
| Escherichia coli strain ETEC4073 | Conjugative plasmid | TA277595, TA277599 | NZ_CP122662 | 1..102120 | 0.007 |