Yersinia pseudotuberculosis YPIII



Accession: NC_010465
 


experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
T6SS ID Type Organism Replicon (Accession) Location Function
T6SS00260 experimentali3Yersinia pseudotuberculosis YPIIIchromosome (NC_010465)3905709..3929297effector translocation
T6SS00258 experimentali3Yersinia pseudotuberculosis YPIIIchromosome (NC_010465)1619849..1653371anti-bacterial

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
Regulator ID Locus tag (Gene) Related T6SS Regulator type Regulatory pathway Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Target (Regulation)
REG0187 experimental YPK_3449 (RelA) T6SS00260 experimental protein (p)ppGpp regulatory pathway Yersinia pseudotuberculosis YPIII chromosome (NC_010465) 3783755..3785989 (-) 488138165 YPK_1551 (RovM) (↓); YPK_1876 (RovA) (↓)
REG0188 experimental YPK_1876 (RovA) T6SS00260 experimental protein (p)ppGpp regulatory pathway Yersinia pseudotuberculosis YPIII chromosome (NC_010465) 2082384..2082815 (+) 488139747 T6SS-4 promoter region (↓); T6SS-4 promoter region (↓)
REG0189 experimental YPK_4079 (OxyR) T6SS00260 experimental protein Global regulator Yersinia pseudotuberculosis YPIII chromosome (NC_010465) 4502978..4503895 (-) 488138270 T6SS-4 promoter region (↓)
REG0190 experimental ypk_3425 (RpoS) T6SS00260 experimental protein Global regulator Yersinia pseudotuberculosis YPIII chromosome (NC_010465) 3759239..3760237 (-) 499505140 T6SS-4 promoter region (↓)
REG0191 experimental YPK_1551 (RovM) T6SS00260 experimental protein (p)ppGpp regulatory pathway Yersinia pseudotuberculosis YPIII chromosome (NC_010465) 1713682..1714884 (-) 499506038 T6SS-4 promoter region (↓)
REG0192 experimental YPK_3567 (RovC) T6SS00260 experimental protein carbon storage regulatory pathway Yersinia pseudotuberculosis YPIII chromosome (NC_010465) 3929654..3930397 (+) 170025782 YPK_3567 promotor (↓)
REG0193 experimental YPK_3372 (CsrA) T6SS00260 experimental protein carbon storage regulatory pathway Yersinia pseudotuberculosis YPIII chromosome (NC_010465) 3698608..3698793 (-) 169752121 YPK_3567 (RovC) (↑); YPK_3563 transcript (↑)
REG0194 experimental YPK_2462 (HpaR) T6SS00260 experimental protein Global regulator Yersinia pseudotuberculosis YPIII chromosome (NC_010465) 2695107..2695574 (+) 169751221 T6SS4 promoter (↓)
REG0195 experimental YPK_RS08345 (YpsR) T6SS00256 insolico protein QS regulatory pathway Yersinia pseudotuberculosis YPIII chromosome (NC_010465) 1837676..1838413 (+) 488140651 T6SS transcripts (↓)
REG0196 experimental YPK_RS03965 (YtbR) T6SS00256 insolico protein QS regulatory pathway Yersinia pseudotuberculosis YPIII chromosome (NC_010465) 900476..901219 (+) 488140447 T6SS transcripts (↓)
REG0197 experimental YPK_RS08350 (ypsI) T6SS00256 insolico protein QS regulatory pathway Yersinia pseudotuberculosis YPIII chromosome (NC_010465) 1838406..1839050 (-) 501053391 T6SS transcripts (↓)
REG0198 experimental YPK_RS03970 (ytbI) T6SS00256 insolico; T6SS00260 experimental protein QS regulatory pathway Yersinia pseudotuberculosis YPIII chromosome (NC_010465) 901200..901850 (-) 488144695 T6SS transcripts (↓); T6SS4 transcripts and hcp secretion (↓)
REG0199 experimental YPK_RS00840 (OmpR) T6SS00260 experimental protein TCS-RR Yersinia pseudotuberculosis YPIII chromosome (NC_010465) 223260..223979 (+) 488137706 T6SS4 promoter (↓)
REG0200 experimental YPK_RS01520 (ZntR) T6SS00260 experimental protein Global regulator Yersinia pseudotuberculosis YPIII chromosome (NC_010465) 333471..333896 (+) 488144494 T6SS4 promoter (↓)
REG0366 experimental YPK_RS19410 (Zur) T6SS00260 experimental protein Global regulator Yersinia pseudotuberculosis YPIII chromosome (NC_010465) 4251751..4252260 (+) 488143439 T6SS4 transcription (↓)

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
Immunity protein ID Locus tag (Gene) Related T6SS Organism                 Replicon (Accession) Coordinates (Strand) Protein GI Cognate effector
IMU00376 experimental YPK_0955 (Tci1) T6SS00260 experimental Yersinia pseudotuberculosis YPIII chromosome (NC_010465) 1070252..1070536 (+) 499506273 EFF76649 experimental

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
ID           Locus tag (Gene) Organism                 Replicon (Accession) Coordinates (Strand) Protein GI Response to T6SS attack Known or putative function

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
Accessory protein ID Locus tag (Gene) Related T6SS Type             Organism                 Replicon (Accession) Coordinates (Strand) Protein GI Related structure protein Related effector
ACP00014 experimental YPK_0782 (btuB) T6SS00258 experimental chaperone Yersinia pseudotuberculosis YPIII chromosome (NC_010465) 1069948..1070205 (+) 488156855 - YPK_0954 (Tce1)
ACP00015 experimental YPK_2649 (ompF) T6SS00258 experimental chaperone Yersinia pseudotuberculosis YPIII chromosome (NC_010465) 2911078..2912160 (+) 501261276 - YPK_0954 (Tce1)
ACP00016 experimental YPK_2956 (tonB) T6SS00258 experimental chaperone Yersinia pseudotuberculosis YPIII chromosome (NC_010465) 3254339..3255631 (-) 488139530 - YPK_0954 (Tce1)