Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00257  |
| T6SS type | Type i2 |
| Strain | Yersinia pseudotuberculosis YPIII |
| Replicon (RefSeq) | chromosome (NC_010465) |
| Location | 906784..918536 |
| Function | - |
| Comment | - |
| References | [1] Zhang W et al (2011) Modulation of a thermoregulated type VI secretion system by AHL-dependent quorum sensing in Yersinia pseudotuberculosis. Arch Microbiol. 193(5):351-63. [PudMed:21298257] [2] Zhang W et al (2012) A type VI secretion system regulated by OmpR in Yersinia pseudotuberculosis functions to maintain intracellular pH homeostasis. Environ Microbiol. 15(2):557-69. [PudMed:23094603] |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | TagL | TssB | TssC | TssD | TssH | TssI | TssK | TssL |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| YPK_RS03975 | 903021..903671 | + | 651 | WP_002215902.1 | CPBP family intramembrane metalloprotease | ||
| YPK_RS03980 | 904122..904517 | + | 396 | WP_002215900.1 | lipoprotein | ||
| YPK_RS03985 | 904585..904926 | + | 342 | pseudogene | IS1 family transposase | ||
| YPK_RS23335 | 905419..905574 | + | 156 | WP_012303633.1 | hypothetical protein | ||
| T6CP002539 | TssB | YPK_RS04000 (tssB) | 906784..907284 | + | 501 | WP_002213014.1 | type VI secretion system contractile sheath small subunit |
| T6CP002540 | TssC | YPK_RS04005 (tssC) | 907327..908877 | + | 1551 | WP_041175952.1 | type VI secretion system contractile sheath large subunit |
| T6CP002541 | TssK | YPK_RS04010 (tssK) | 908889..910241 | + | 1353 | WP_011192077.1 | type VI secretion system baseplate subunit TssK |
| T6CP009308 | TssL | YPK_RS04015 | 910238..910924 | + | 687 | WP_012303635.1 | type VI secretion system protein TssL, short form |
| T6CP011648 | TagL | YPK_RS04020 | 910924..912660 | + | 1737 | WP_012303636.1 | OmpA family protein |
| T6CP008679 | TssD | YPK_RS04025 | 912664..913155 | + | 492 | WP_002210014.1 | Hcp family type VI secretion system effector |
| T6CP002542 | TssH | YPK_RS04030 (tssH) | 913543..916185 | + | 2643 | WP_012303637.1 | type VI secretion system ATPase TssH |
| T6CP002543 | TssI | YPK_RS04035 | 916188..918536 | + | 2349 | WP_012303638.1 | type VI secretion system tip protein VgrG |
| YPK_RS04040 | 918552..920849 | + | 2298 | WP_012303639.1 | M23 family metallopeptidase | ||
| YPK_RS04045 | 920836..921603 | + | 768 | WP_002210008.1 | hypothetical protein | ||
| YPK_RS22775 | 921699..922272 | + | 574 | pseudogene | IS1 family transposase | ||
| YPK_RS21790 | 922937..923514 | + | 578 | pseudogene | DUF2345 domain-containing protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
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