Detailed information of component protein


Summary

Component ID T6CP009308
Component protein type TssL
T6SS ID (Type) T6SS00257 insolico (Type i2)
Strain Yersinia pseudotuberculosis YPIII
Replicon chromosome
Sequence Protein sequence (229 a.a.); Nucleotide sequence (687 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPK_RS04015
Coordinate (Strand) 910238..910924 (+)
NCBI ID WP_012303635.1
RefSeq NC_010465
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DotU PF09850.11 1.4e-41 14..215
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-192 MNPHLTEHPPVGDIDALLQDTWLQVISLRQGVTCAEGEGLAFWQRCVADIERVHQALKDAGHSEQSCQHIRYAQCALLDETVKGRGVQDDAYFVWCHSPLQAHFFNTLDAGSQLYERMRAVLHEPAPDSAVLTCFHRVLMLGFLGGYASPAASEREQLIDQLSVQVPAFSVAPSGGILASAASRNRLGIWLR
Transmembrane helix 193-212 YWPVRLGLAALMVALLWWGL
Outside 213-228 DHWLSGLLTTLLPEPV


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9913 - -


  Protein sequence: 229 a.a.    

>T6CP009308 NC_010465:910238-910924 [Yersinia pseudotuberculosis YPIII] [TssL]
MNPHLTEHPPVGDIDALLQDTWLQVISLRQGVTCAEGEGLAFWQRCVADIERVHQALKDAGHSEQSCQHIRYAQCALLDE
TVKGRGVQDDAYFVWCHSPLQAHFFNTLDAGSQLYERMRAVLHEPAPDSAVLTCFHRVLMLGFLGGYASPAASEREQLID
QLSVQVPAFSVAPSGGILASAASRNRLGIWLRYWPVRLGLAALMVALLWWGLDHWLSGLLTTLLPEPV*

  Nucleotide sequence: 687 bp    

>T6CP009308 NC_010465:910238-910924 [Yersinia pseudotuberculosis YPIII] [TssL]
ATGAATCCTCACCTAACCGAACACCCCCCAGTCGGGGATATTGACGCCCTGTTACAGGACACCTGGCTACAGGTGATCAG
CCTGCGTCAAGGGGTAACCTGTGCCGAGGGCGAAGGGCTGGCATTCTGGCAGCGCTGTGTGGCGGACATTGAACGTGTCC
ATCAGGCGCTGAAAGACGCCGGTCACAGCGAGCAGAGTTGCCAGCACATCCGATACGCCCAATGTGCACTGCTGGATGAG
ACCGTGAAAGGGCGCGGTGTACAGGATGACGCCTACTTTGTGTGGTGTCATTCGCCCTTACAGGCGCATTTTTTCAATAC
CCTGGATGCCGGTAGCCAGCTTTACGAGCGGATGCGCGCCGTGTTGCATGAGCCTGCGCCGGACAGCGCGGTACTGACCT
GTTTTCACCGGGTATTGATGTTGGGCTTCCTCGGCGGGTACGCCTCCCCGGCGGCTTCTGAACGGGAGCAACTGATCGAT
CAACTGAGCGTGCAGGTACCGGCGTTCAGTGTCGCGCCATCCGGTGGGATCCTGGCAAGCGCCGCCTCCCGCAACCGGTT
GGGGATCTGGCTGCGTTACTGGCCGGTACGGCTCGGGCTGGCTGCGCTGATGGTTGCGCTGTTGTGGTGGGGCCTTGATC
ACTGGCTATCCGGTCTGTTAACCACCTTACTGCCGGAGCCGGTGTAA