Detailed information of component protein


Summary

Component ID T6CP011648
Component protein type TagL
T6SS ID (Type) T6SS00257 insolico (Type i2)
Strain Yersinia pseudotuberculosis YPIII
Replicon chromosome
Sequence Protein sequence (579 a.a.); Nucleotide sequence (1737 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPK_RS04020
Coordinate (Strand) 910924..912660 (+)
NCBI ID WP_012303636.1
RefSeq NC_010465
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Loading, please wait
Domain
Pfam ID
E-value
Aligned region
OmpAPF00691.222.1e-15447..543
Showing 1 to 1 of 1 rows
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Loading, please wait
Prediction                
Region    
Sequence
Inside1-8MSRWWQRG
Transmembrane helix9-31LWLWAGLLAVILCLALLPLSPWG
Outside32-578RWLMLAWVVLICMLGGSRAGRQAAGASSDPLFAGLATENGLLPENSRLPVVLVCGDGLASWFGRERSHQSAQGCWLRVDDISTLRQFARQLLWQRPEWAAQLAVMMVVNPQQRRDERLLAADLQELRWQLMQLRRDSRHPVPLLLSSTVATSVARDTVWLSQQQTPPLTLWSTVSTPGSLADWQRAESRAVQAERLKQAVLFSSQHDWLNAQVLPVLQAPNADVAPLAPQQIIQQQVASLADPVPASLWQHWLAAHTTLTQVAGWHPPPPAAHDALPLPDFVFSALPLGSGVSSRRRVLRHGVTLLTLAAMVALCSSAWQNRQLLHRVAFDIRQYHSVAMTDYSPKAQAVAVLRRDAGLLDEGYRNGEPLRLGLGLYRGERLRPPLLAAIKSYIPPPPPPPAPPAPKTVRLDSLSLFDVGKFTLNAGSTKMLVTALIDIKAKPGWLIVVAGHTDITGDAQANHILSLKRAEALRDWMLSTSDVSPTCFAVQGYGATRPIADNDTPDGRALNRRVEISLVPQADACQVPDVKTASQDESDVSTQEMEK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Loading, please wait
Prediction       
Probability
Cleavage site
Signal peptide sequence
Other0.9228--


  Protein sequence: 579 a.a.    

>T6CP011648 NC_010465:910924-912660 [Yersinia pseudotuberculosis YPIII] [TagL]
MSRWWQRGLWLWAGLLAVILCLALLPLSPWGRWLMLAWVVLICMLGGSRAGRQAAGASSDPLFAGLATENGLLPENSRLP
VVLVCGDGLASWFGRERSHQSAQGCWLRVDDISTLRQFARQLLWQRPEWAAQLAVMMVVNPQQRRDERLLAADLQELRWQ
LMQLRRDSRHPVPLLLSSTVATSVARDTVWLSQQQTPPLTLWSTVSTPGSLADWQRAESRAVQAERLKQAVLFSSQHDWL
NAQVLPVLQAPNADVAPLAPQQIIQQQVASLADPVPASLWQHWLAAHTTLTQVAGWHPPPPAAHDALPLPDFVFSALPLG
SGVSSRRRVLRHGVTLLTLAAMVALCSSAWQNRQLLHRVAFDIRQYHSVAMTDYSPKAQAVAVLRRDAGLLDEGYRNGEP
LRLGLGLYRGERLRPPLLAAIKSYIPPPPPPPAPPAPKTVRLDSLSLFDVGKFTLNAGSTKMLVTALIDIKAKPGWLIVV
AGHTDITGDAQANHILSLKRAEALRDWMLSTSDVSPTCFAVQGYGATRPIADNDTPDGRALNRRVEISLVPQADACQVPD
VKTASQDESDVSTQEMEK*

  Nucleotide sequence: 1737 bp    

>T6CP011648 NC_010465:910924-912660 [Yersinia pseudotuberculosis YPIII] [TagL]
ATGAGTCGGTGGTGGCAACGTGGGTTGTGGCTCTGGGCGGGTTTGCTGGCGGTCATCTTGTGTCTGGCATTGCTGCCGCT
CTCCCCGTGGGGGCGCTGGCTGATGCTGGCATGGGTGGTGCTGATTTGCATGCTGGGCGGGTCGCGGGCAGGGCGGCAAG
CGGCCGGTGCATCCTCTGATCCGCTGTTCGCCGGGTTGGCAACTGAAAACGGTCTTCTCCCTGAAAACAGTCGCTTACCG
GTGGTGTTGGTGTGTGGTGATGGTCTGGCGTCATGGTTTGGTCGCGAACGGTCACACCAGAGTGCACAGGGCTGCTGGCT
GCGGGTGGATGATATCAGCACCCTGCGGCAGTTTGCCCGACAACTGCTGTGGCAACGGCCGGAATGGGCCGCTCAGTTGG
CGGTGATGATGGTCGTGAACCCGCAGCAACGCCGCGATGAGCGCCTGCTGGCCGCCGATCTGCAAGAGCTGCGCTGGCAA
CTGATGCAACTGCGCCGCGATAGCCGCCATCCAGTTCCCTTGCTCCTGAGCAGCACGGTGGCCACCTCGGTTGCCCGTGA
TACGGTCTGGCTGTCACAGCAGCAGACACCGCCGCTGACACTCTGGTCAACCGTCTCGACGCCGGGCTCTCTGGCCGACT
GGCAGCGTGCGGAAAGCCGTGCCGTACAGGCTGAACGACTGAAACAGGCGGTGCTGTTCAGCAGCCAGCATGACTGGCTG
AACGCACAGGTGCTGCCGGTATTGCAGGCACCCAATGCGGATGTTGCCCCCCTTGCCCCGCAACAGATTATTCAACAGCA
GGTTGCCAGTCTGGCCGATCCGGTGCCTGCCTCGCTGTGGCAGCACTGGCTGGCGGCGCATACCACGCTGACACAGGTGG
CGGGTTGGCATCCACCGCCGCCCGCCGCCCATGACGCCTTACCGCTGCCGGATTTTGTCTTTTCAGCGCTTCCTCTTGGT
AGCGGGGTGTCGTCACGCCGTCGGGTACTGCGCCATGGTGTCACCTTACTGACGTTGGCGGCGATGGTGGCGTTGTGCAG
CAGCGCCTGGCAGAACCGGCAACTGTTGCACCGGGTGGCCTTTGATATCCGTCAGTACCACAGCGTGGCGATGACGGATT
ATTCCCCGAAAGCGCAGGCGGTGGCGGTATTACGCCGTGATGCGGGGCTGCTTGATGAAGGGTACCGCAACGGTGAACCG
CTGCGTCTGGGCCTGGGGTTATATCGGGGGGAGCGGCTGCGCCCGCCGCTGTTGGCGGCGATCAAAAGCTACATCCCGCC
GCCTCCTCCGCCTCCCGCGCCACCGGCGCCGAAAACCGTGCGTCTCGACAGCCTGTCACTGTTCGATGTGGGTAAATTCA
CGCTGAATGCGGGGTCCACCAAAATGCTGGTCACGGCGCTGATCGACATCAAAGCCAAACCCGGCTGGCTGATCGTGGTG
GCGGGTCACACCGACATCACCGGCGATGCGCAGGCCAACCACATTCTGTCGCTTAAACGCGCCGAAGCATTACGGGACTG
GATGCTGTCAACCAGCGACGTCTCGCCGACCTGCTTTGCGGTGCAAGGTTACGGGGCCACACGCCCTATCGCCGACAACG
ATACTCCCGACGGTCGGGCGCTCAACCGCCGGGTCGAAATCAGTCTGGTACCGCAGGCTGATGCCTGTCAGGTGCCGGAT
GTAAAAACAGCGTCACAGGATGAAAGTGACGTATCAACGCAAGAAATGGAGAAGTAA