Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00259  |
| T6SS type | Type i2 |
| Strain | Yersinia pseudotuberculosis YPIII |
| Replicon (RefSeq) | chromosome (NC_010465) |
| Location | 2838599..2856472 |
| Function | - |
| Comment | - |
| References | [1] Zhang W et al (2011) Modulation of a thermoregulated type VI secretion system by AHL-dependent quorum sensing in Yersinia pseudotuberculosis. Arch Microbiol. 193(5):351-63. [PudMed:21298257] [2] Zhang W et al (2012) A type VI secretion system regulated by OmpR in Yersinia pseudotuberculosis functions to maintain intracellular pH homeostasis. Environ Microbiol. 15(2):557-69. [PudMed:23094603] |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | PAAR | TssA | TssB | TssE | TssF | TssG | TssJ | TssM |
| Number | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| YPK_RS12900 (moeB) | 2833782..2834552 | + | 771 | WP_002211948.1 | molybdopterin-synthase adenylyltransferase MoeB | ||
| YPK_RS12905 | 2834624..2835271 | - | 648 | WP_012304266.1 | hypothetical protein | ||
| YPK_RS12910 | 2835489..2837084 | - | 1596 | WP_012304267.1 | ABC-F family ATPase | ||
| YPK_RS12915 | 2837768..2838391 | + | 624 | WP_012304268.1 | hypothetical protein | ||
| T6CP008680 | TssA | YPK_RS12920 | 2838599..2839966 | - | 1368 | WP_012304269.1 | type VI secretion system ImpA and VasL domain-containing protein |
| T6CP002557 | TssE | YPK_RS12925 (tssE) | 2839991..2840443 | - | 453 | WP_011192093.1 | type VI secretion system baseplate subunit TssE |
| T6CP002558 | TssJ | YPK_RS12930 (tssJ) | 2840443..2841024 | - | 582 | WP_012304270.1 | type VI secretion system lipoprotein TssJ |
| T6CP002559 | TssG | YPK_RS12935 (tssG) | 2840999..2842084 | - | 1086 | WP_012304271.1 | type VI secretion system baseplate subunit TssG |
| T6CP002560 | TssF | YPK_RS12940 (tssF) | 2842048..2843811 | - | 1764 | WP_012304272.1 | type VI secretion system baseplate subunit TssF |
| YPK_RS12945 | 2844032..2844487 | - | 456 | WP_002211939.1 | hypothetical protein | ||
| T6CP011651 | PAAR | YPK_RS12950 | 2844502..2845560 | - | 1059 | WP_012304273.1 | PAAR domain-containing protein |
| T6CP008681 | TssA | YPK_RS12955 (tssA) | 2845578..2847179 | - | 1602 | WP_012304274.1 | type VI secretion system protein TssA |
| T6CP002561 | TssM | YPK_RS12960 | 2847223..2850645 | - | 3423 | WP_012304275.1 | type VI secretion system membrane subunit |
| YPK_RS12965 | 2850642..2851874 | - | 1233 | WP_012304276.1 | hypothetical protein | ||
| YPK_RS12970 | 2851981..2852799 | - | 819 | WP_041175992.1 | hypothetical protein | ||
| YPK_RS12975 | 2852812..2853246 | - | 435 | WP_012304278.1 | hypothetical protein | ||
| YPK_RS21515 | 2853585..2853857 | - | 273 | WP_012304279.1 | hypothetical protein | ||
| YPK_RS12985 | 2853902..2854681 | - | 780 | WP_041176095.1 | hypothetical protein | ||
| YPK_RS12990 | 2854732..2855034 | - | 303 | WP_012304281.1 | hypothetical protein | ||
| YPK_RS12995 (tssC) | 2855039..2855929 | - | 891 | pseudogene | type VI secretion system contractile sheath large subunit | ||
| T6CP002563 | TssB | YPK_RS13000 (tssB) | 2855972..2856472 | - | 501 | WP_002213014.1 | type VI secretion system contractile sheath small subunit |
| YPK_RS13010 | 2857435..2858283 | - | 849 | WP_002213016.1 | ACP S-malonyltransferase | ||
| YPK_RS13015 | 2858382..2858630 | - | 249 | WP_002213017.1 | acyl carrier protein | ||
| YPK_RS13020 | 2858678..2859118 | - | 441 | WP_002228570.1 | lipocalin-like domain-containing protein | ||
| YPK_RS13025 | 2859205..2859993 | - | 789 | WP_002213024.1 | SDR family oxidoreductase | ||
| YPK_RS13030 | 2859996..2860748 | - | 753 | WP_002213025.1 | enoyl-CoA hydratase/isomerase family protein | ||
| YPK_RS13035 | 2860750..2861469 | - | 720 | WP_002213026.1 | enoyl-CoA hydratase/isomerase family protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
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