Detailed information of component protein


Summary

Component ID T6CP008681
Component protein type TssA
T6SS ID (Type) T6SS00259 insolico (Type i2)
Strain Yersinia pseudotuberculosis YPIII
Replicon chromosome
Sequence Protein sequence (534 a.a.); Nucleotide sequence (1602 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPK_RS12955
Coordinate (Strand) 2845578..2847179 (-)
NCBI ID WP_012304274.1
RefSeq NC_010465
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasJ PF16989.7 7.3e-80 230..490
ImpA_N PF06812.14 2e-20 33..138
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-533 MATLTTLLTACAAEPEPLLQQARQQVALWERWLQPVTPDKHTGEDPGYDDHFQQMREEVNKLSGADTTLTCELAEKLFTTHGKDVRVATYYVWARLHRDGEAGLADGLSLLAGLITRFGEGLHPLRATSRKTALEWLAGSRMRDSLSLYPEVDKADFERIVGALALIEQGLSLWDEGVRPQLGGLYTALENRLVQSGGLNAVVPQNSSGSSSAGSLNPANMASPALRPVQSGRDLLDQTKTLAKYLRNQPQGWLSGHHLIKSVRWDTVHQSPPLDVNGRTRLVPPRPEYRVQLKRLYLQQNWLALLEQAESIFAEGVNHFWLDVQWYLHQALSKAGAPFDGWASCITQDLRLLLTRLPGLEGLCWSDGTPFADEVTLGWINQQVLESVSGWGSEPAAVSSGEDGILLLEPEALAQADSEGIEAALNWLQSRPGITTARHQWLLRLVMARVAEQYGKNDMALHLLSGLDSSGALLTLPQWEPGLVFEVKARRLKLLRMKAQRGDSDKTRLHAEMESLLGGLIALDPARAAVLCG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
LIPO(Sec/SPII) 0.4714 pos: 10-11. LTA-CA. MATLTTLLTA


  Protein sequence: 534 a.a.    

>T6CP008681 NC_010465:c2847179-2845578 [Yersinia pseudotuberculosis YPIII] [TssA]
MATLTTLLTACAAEPEPLLQQARQQVALWERWLQPVTPDKHTGEDPGYDDHFQQMREEVNKLSGADTTLTCELAEKLFTT
HGKDVRVATYYVWARLHRDGEAGLADGLSLLAGLITRFGEGLHPLRATSRKTALEWLAGSRMRDSLSLYPEVDKADFERI
VGALALIEQGLSLWDEGVRPQLGGLYTALENRLVQSGGLNAVVPQNSSGSSSAGSLNPANMASPALRPVQSGRDLLDQTK
TLAKYLRNQPQGWLSGHHLIKSVRWDTVHQSPPLDVNGRTRLVPPRPEYRVQLKRLYLQQNWLALLEQAESIFAEGVNHF
WLDVQWYLHQALSKAGAPFDGWASCITQDLRLLLTRLPGLEGLCWSDGTPFADEVTLGWINQQVLESVSGWGSEPAAVSS
GEDGILLLEPEALAQADSEGIEAALNWLQSRPGITTARHQWLLRLVMARVAEQYGKNDMALHLLSGLDSSGALLTLPQWE
PGLVFEVKARRLKLLRMKAQRGDSDKTRLHAEMESLLGGLIALDPARAAVLCG*

  Nucleotide sequence: 1602 bp    

>T6CP008681 NC_010465:c2847179-2845578 [Yersinia pseudotuberculosis YPIII] [TssA]
ATGGCGACGTTAACTACCTTGCTCACCGCTTGTGCCGCAGAGCCTGAGCCACTTTTACAGCAGGCCAGACAACAGGTTGC
GCTCTGGGAACGTTGGTTGCAACCGGTGACACCCGATAAGCATACCGGTGAAGACCCCGGTTACGATGACCACTTCCAAC
AGATGCGTGAAGAGGTCAATAAGCTCTCGGGTGCCGATACCACGCTGACCTGCGAGCTGGCTGAAAAGCTGTTCACCACA
CACGGCAAGGATGTGCGGGTGGCAACCTATTACGTCTGGGCGCGGTTGCACCGTGACGGCGAGGCCGGGCTGGCGGATGG
CCTTTCCCTGCTGGCCGGGCTGATCACGCGCTTTGGTGAGGGCCTGCATCCGCTGCGTGCAACCAGCCGGAAAACCGCGT
TGGAGTGGCTGGCCGGCTCCCGGATGCGCGACAGCTTGTCACTTTACCCGGAAGTGGATAAAGCCGATTTTGAGCGTATC
GTGGGCGCACTGGCCCTTATCGAACAGGGGCTCAGTCTCTGGGACGAAGGCGTCCGGCCGCAACTGGGCGGGTTGTATAC
CGCCCTGGAAAACCGCCTCGTGCAATCTGGCGGGCTAAATGCCGTGGTGCCGCAAAACAGCAGCGGGTCATCATCGGCAG
GCAGCTTGAACCCGGCCAACATGGCGTCACCGGCGTTGCGCCCAGTGCAATCGGGGCGTGACCTGCTCGATCAGACCAAA
ACGCTGGCAAAATACCTGCGCAACCAGCCGCAGGGCTGGCTCTCCGGGCATCATCTTATCAAAAGCGTGCGCTGGGATAC
GGTACATCAGTCACCGCCATTAGATGTGAACGGACGGACCCGGCTGGTACCGCCGCGCCCGGAATATCGCGTACAGCTCA
AGCGGCTTTATCTGCAACAAAACTGGCTGGCGTTGCTGGAACAGGCCGAATCGATATTTGCCGAAGGGGTTAACCATTTC
TGGCTCGATGTGCAGTGGTACCTGCATCAGGCCCTCAGCAAAGCGGGGGCCCCATTCGATGGCTGGGCGAGCTGTATCAC
GCAGGATTTACGGTTATTACTGACCCGGCTGCCGGGGCTGGAAGGGCTATGCTGGAGTGACGGCACGCCATTTGCCGATG
AGGTGACGCTGGGGTGGATAAACCAGCAGGTACTGGAGTCGGTCTCGGGCTGGGGCAGCGAGCCGGCCGCCGTTTCATCC
GGTGAGGATGGCATTCTGTTGCTGGAGCCAGAAGCTTTGGCTCAGGCGGACAGCGAAGGAATTGAAGCGGCGCTTAACTG
GTTGCAGTCACGACCGGGGATCACCACGGCGCGCCATCAGTGGCTGCTGCGTCTGGTGATGGCCCGGGTGGCGGAGCAGT
ACGGTAAGAACGATATGGCACTGCATCTGCTGAGTGGCCTTGATAGCAGCGGCGCGTTGTTGACCTTGCCACAGTGGGAG
CCGGGGTTGGTGTTTGAAGTTAAAGCCCGCCGTTTGAAGCTGTTGCGTATGAAGGCACAACGGGGTGACAGTGATAAAAC
CCGCCTGCATGCTGAAATGGAAAGCCTGCTCGGTGGGCTTATCGCCCTCGACCCGGCCCGTGCGGCCGTATTATGCGGAT
AA