Detailed information of component protein


Summary

Component ID T6CP002559
Component protein type TssG
T6SS ID (Type) T6SS00259 insolico (Type i2)
Strain Yersinia pseudotuberculosis YPIII
Replicon chromosome
Sequence Protein sequence (362 a.a.); Nucleotide sequence (1086 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPK_RS12935
Coordinate (Strand) 2840999..2842084 (-)
NCBI ID WP_012304271.1
RefSeq NC_010465
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 1.1e-73 22..319
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-361 MGRESSVPPSRLITRLKRDIGQINFYRFCQLLEQQPGTLPLGSTNSPADDPVRFRPHPGMGFPVSELKALENDPLHPEAPLTARTTFMGLYGVDSPLPTAYIDDITQQREGHEALEGFLDIFNHRFMTQFYRIWRKYSYPATFESGGTDNTSQSLLGLIGMGIPGSQQHFATPTSRFLALLGVMRQPGRTAEGVQALVRLLAPFTEADVTPHCLRTVRLTSPMAFADEGANWLDGYTVLGDEAIDANSQLLISLRTADRDEAANWLPDGPLYTDFLVLLRVYLGWRYRACIQLTVATRLLPALVLDETPIRLGLTGVLGLDDATRSDDIPEYFTVALGHYRGLAPQQHQEGNRRVNYRLEK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9853 - -


  Protein sequence: 362 a.a.    

>T6CP002559 NC_010465:c2842084-2840999 [Yersinia pseudotuberculosis YPIII] [TssG]
MGRESSVPPSRLITRLKRDIGQINFYRFCQLLEQQPGTLPLGSTNSPADDPVRFRPHPGMGFPVSELKALENDPLHPEAP
LTARTTFMGLYGVDSPLPTAYIDDITQQREGHEALEGFLDIFNHRFMTQFYRIWRKYSYPATFESGGTDNTSQSLLGLIG
MGIPGSQQHFATPTSRFLALLGVMRQPGRTAEGVQALVRLLAPFTEADVTPHCLRTVRLTSPMAFADEGANWLDGYTVLG
DEAIDANSQLLISLRTADRDEAANWLPDGPLYTDFLVLLRVYLGWRYRACIQLTVATRLLPALVLDETPIRLGLTGVLGL
DDATRSDDIPEYFTVALGHYRGLAPQQHQEGNRRVNYRLEK*

  Nucleotide sequence: 1086 bp    

>T6CP002559 NC_010465:c2842084-2840999 [Yersinia pseudotuberculosis YPIII] [TssG]
ATGGGAAGAGAATCATCAGTCCCGCCTTCCCGGCTAATCACCCGGCTTAAGCGCGATATCGGCCAGATCAATTTTTACCG
TTTCTGTCAGTTGCTGGAGCAACAACCGGGAACCTTGCCGCTCGGCAGTACCAACAGCCCGGCGGATGATCCGGTGCGTT
TTCGTCCGCATCCCGGCATGGGTTTTCCGGTCAGTGAACTGAAGGCGCTGGAAAACGACCCGCTGCATCCGGAAGCCCCG
TTGACCGCGCGCACCACCTTTATGGGGTTGTACGGGGTGGATTCGCCTTTGCCGACGGCCTATATCGACGATATCACCCA
GCAGCGCGAAGGGCATGAGGCGCTGGAAGGGTTCCTCGATATTTTCAACCACCGTTTTATGACGCAGTTTTATCGCATCT
GGCGCAAATATTCCTATCCGGCCACTTTTGAGTCGGGCGGCACAGACAATACCTCTCAGAGCCTGTTGGGGCTGATAGGC
ATGGGTATTCCTGGCTCACAGCAGCATTTTGCCACCCCGACATCGCGCTTTCTGGCCTTGCTGGGGGTGATGCGACAACC
GGGGCGCACTGCCGAAGGGGTACAGGCGCTGGTCCGGCTGCTGGCCCCGTTTACCGAGGCGGATGTCACGCCCCATTGCC
TGCGCACGGTACGCCTGACTTCTCCGATGGCGTTTGCCGATGAAGGGGCCAACTGGCTGGACGGCTACACCGTGCTGGGT
GATGAGGCCATTGATGCCAACAGTCAGTTGCTGATTTCGCTGCGCACGGCAGACCGCGACGAGGCCGCTAACTGGTTACC
GGATGGCCCGCTGTATACCGATTTTCTGGTGCTGTTGCGGGTCTATCTGGGCTGGCGTTACCGGGCCTGTATCCAACTGA
CGGTCGCCACCCGGTTGCTGCCGGCGTTGGTGTTGGATGAGACACCGATAAGGCTGGGATTAACCGGCGTGCTGGGGCTG
GATGACGCGACGCGGTCAGACGATATACCTGAATATTTTACCGTGGCGCTGGGCCACTACCGTGGGCTGGCTCCACAGCA
ACATCAAGAAGGAAACCGACGTGTTAACTACCGTTTGGAAAAATAA