Detailed information of component protein


Summary

Component ID T6CP002563
Component protein type TssB
T6SS ID (Type) T6SS00259 insolico (Type i2)
Strain Yersinia pseudotuberculosis YPIII
Replicon chromosome
Sequence Protein sequence (167 a.a.); Nucleotide sequence (501 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene) YPK_RS13000
Coordinate (Strand) 2855972..2856472 (-)
NCBI ID WP_002213014.1
RefSeq NC_010465
Uniprot ID -
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VipA PF05591.14 9.9e-56 8..158

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-166 MSSSSFQNEIPKARINIKLDLHTGGAQKKVELPLKLLVMGDYSNGQEQRPLSEREKLNINKNNFNSVLAEFQPSLKLAVPDTLAGDNTDTAVALTFREMKDFEPESVARQIPQLRALLAMRNLLRDLKSNLLDNATFRRELENILKDDALSDELRAELAALAPKEG



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9910 - -



  Protein sequence: 167 a.a.    

>T6CP002563 NC_010465:c2856472-2855972 [Yersinia pseudotuberculosis YPIII] [TssB]
MSSSSFQNEIPKARINIKLDLHTGGAQKKVELPLKLLVMGDYSNGQEQRPLSEREKLNINKNNFNSVLAEFQPSLKLAVP
DTLAGDNTDTAVALTFREMKDFEPESVARQIPQLRALLAMRNLLRDLKSNLLDNATFRRELENILKDDALSDELRAELAA
LAPKEG*

  Nucleotide sequence: 501 bp    

>T6CP002563 NC_010465:c2856472-2855972 [Yersinia pseudotuberculosis YPIII] [TssB]
ATGTCCTCTTCAAGCTTCCAAAATGAGATACCTAAAGCACGCATTAACATCAAATTAGACCTGCATACTGGCGGGGCGCA
AAAGAAAGTCGAACTGCCTTTGAAGTTGTTGGTGATGGGCGATTACAGCAACGGTCAGGAGCAGCGCCCGCTGTCTGAAC
GTGAAAAACTCAATATCAATAAAAACAATTTTAACAGTGTGCTGGCTGAATTCCAACCGAGCCTGAAACTCGCTGTACCG
GACACGCTGGCCGGGGATAACACCGATACAGCCGTCGCTTTGACCTTCCGCGAGATGAAAGATTTCGAACCGGAAAGCGT
CGCCCGTCAAATCCCGCAACTGCGCGCCTTGCTGGCGATGCGCAACCTGCTGCGAGACCTCAAATCCAATCTGCTGGACA
ACGCCACCTTCCGCCGTGAGCTGGAAAATATCCTCAAAGACGATGCCTTGAGCGATGAACTGCGCGCTGAACTGGCGGCC
CTGGCACCAAAAGAGGGTTAA