Detailed information of component protein


Summary

Component ID T6CP011651
Component protein type PAAR
T6SS ID (Type) T6SS00259 insolico (Type i2)
Strain Yersinia pseudotuberculosis YPIII
Replicon chromosome
Sequence Protein sequence (353 a.a.); Nucleotide sequence (1059 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPK_RS12950
Coordinate (Strand) 2844502..2845560 (-)
NCBI ID WP_012304273.1
RefSeq NC_010465
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Ntox44 PF15607.8 2e-30 196..303
PAAR_motif PF05488.15 2.2e-07 9..53
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-352 MAKGYYLGVGDETTCGGVIIEGDATHVLMGKTVAREQDRVTCGKHPGTYIIIGHVPGDSVNGRKFAGTLNSQSNCPCKAWFIPSLVHDTYEFGARSKSQNMSEISTEVEREMVENVSESEEKSKVVCAHIDGALVVASYILDEIKKNVKSDTADKIRSFIDNDLYKKRLKEWQDSPWYARMNAPPQPEIISASVLWFMAVKSGAKWDHKPKIRDQFKAYAVSRPLVGSGTRSKSYFHKYEEHDYFYDVWSNIHYGYVGLSLGFDESYLLLGSTLEQVRTSIGSKPDPIDDITCMKIGYALYHQHGKYAETLDVRHILDALESASDLDLAISRQIHWCWNNDNSSQIDHPQGK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9838 - -


  Protein sequence: 353 a.a.    

>T6CP011651 NC_010465:c2845560-2844502 [Yersinia pseudotuberculosis YPIII] [PAAR]
MAKGYYLGVGDETTCGGVIIEGDATHVLMGKTVAREQDRVTCGKHPGTYIIIGHVPGDSVNGRKFAGTLNSQSNCPCKAW
FIPSLVHDTYEFGARSKSQNMSEISTEVEREMVENVSESEEKSKVVCAHIDGALVVASYILDEIKKNVKSDTADKIRSFI
DNDLYKKRLKEWQDSPWYARMNAPPQPEIISASVLWFMAVKSGAKWDHKPKIRDQFKAYAVSRPLVGSGTRSKSYFHKYE
EHDYFYDVWSNIHYGYVGLSLGFDESYLLLGSTLEQVRTSIGSKPDPIDDITCMKIGYALYHQHGKYAETLDVRHILDAL
ESASDLDLAISRQIHWCWNNDNSSQIDHPQGK*

  Nucleotide sequence: 1059 bp    

>T6CP011651 NC_010465:c2845560-2844502 [Yersinia pseudotuberculosis YPIII] [PAAR]
ATGGCAAAAGGCTATTACCTTGGGGTTGGGGATGAAACAACCTGCGGCGGCGTGATCATCGAAGGTGACGCCACACATGT
CTTGATGGGTAAAACGGTGGCCCGTGAACAAGACAGAGTGACCTGCGGTAAACATCCGGGAACCTATATTATTATCGGCC
ATGTTCCTGGCGATTCGGTAAATGGCCGCAAGTTTGCGGGCACCTTGAATAGTCAAAGCAATTGCCCGTGCAAGGCGTGG
TTTATTCCTTCTTTGGTGCATGATACGTATGAGTTTGGTGCAAGAAGTAAATCACAAAATATGTCTGAAATTAGTACTGA
AGTCGAACGTGAGATGGTAGAAAATGTGAGTGAATCAGAAGAAAAATCTAAAGTTGTCTGTGCCCATATTGATGGCGCTT
TAGTAGTAGCGAGTTATATCCTTGATGAAATAAAGAAAAATGTAAAAAGTGATACCGCTGATAAAATCAGATCTTTTATC
GATAATGACCTCTATAAAAAAAGACTTAAGGAGTGGCAGGATTCTCCTTGGTACGCGAGAATGAATGCACCTCCACAGCC
TGAAATAATATCGGCATCGGTTTTATGGTTTATGGCGGTCAAGAGTGGTGCTAAATGGGATCATAAACCTAAAATTAGAG
ATCAATTTAAAGCATATGCAGTTTCTCGTCCTCTGGTCGGAAGCGGAACCCGATCAAAAAGCTATTTTCATAAATATGAA
GAACATGATTATTTTTATGATGTCTGGTCCAATATTCACTATGGTTATGTAGGCTTAAGTCTTGGTTTTGATGAGTCATA
TTTATTACTTGGCTCAACCCTTGAGCAAGTAAGAACCAGCATCGGGAGTAAACCAGATCCTATAGATGATATTACATGTA
TGAAAATTGGCTATGCACTCTATCATCAACATGGAAAATATGCTGAGACGTTAGATGTCAGGCATATACTCGATGCTCTT
GAATCAGCATCGGACCTTGATCTAGCTATTTCAAGACAAATTCATTGGTGTTGGAATAATGATAATTCGAGTCAAATTGA
TCACCCGCAGGGTAAGTAA