Detailed information of component protein


Summary

Component ID T6CP008680
Component protein type TssA
T6SS ID (Type) T6SS00259 insolico (Type i2)
Strain Yersinia pseudotuberculosis YPIII
Replicon chromosome
Sequence Protein sequence (456 a.a.); Nucleotide sequence (1368 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPK_RS12920
Coordinate (Strand) 2838599..2839966 (-)
NCBI ID WP_012304269.1
RefSeq NC_010465
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VasL PF12486.10 3.8e-44 303..448
ImpA_N PF06812.14 2.2e-20 10..112
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-455 MAGNTERLLKTGGDPRALADFTALRGELNKLAHPARPDVDWARVEQLCLALFRQNGVELQTAVDFTLARTHTAGLAGLCEGLELLAGLVCHQWSGLWPPQTHVRVALLAWLSDRLQQVWRTMTLCYGDLAQVYRAERALEQLCAQLQTLELKHLCKLDGVRLMLHNAAQRLESTEAVSGLAKPRGASEPPESLRFASVPVSEPLVYIISEPAPPPVQVVLPASPPRWKAGHGFAAGLSLMAVLMAGSFVIWQSVSSDPVRETLLATASPLPIPLSANSIAELKKQASDVEWARLAEPVLQASATQLDQLAQLPPLWAQARGDALLSQAQQLWPASQEVKRLSTLWQQQREAGAAPLVELKHYALAQDRLRQLAERLNSLDEKKRGYMTVSELKSAVFAIQQPLAQAVPLEELLRQYQEQLESGQTPSSALRQQIDSRFSQLLNRYALLVVPPGVQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9941 - -


  Protein sequence: 456 a.a.    

>T6CP008680 NC_010465:c2839966-2838599 [Yersinia pseudotuberculosis YPIII] [TssA]
MAGNTERLLKTGGDPRALADFTALRGELNKLAHPARPDVDWARVEQLCLALFRQNGVELQTAVDFTLARTHTAGLAGLCE
GLELLAGLVCHQWSGLWPPQTHVRVALLAWLSDRLQQVWRTMTLCYGDLAQVYRAERALEQLCAQLQTLELKHLCKLDGV
RLMLHNAAQRLESTEAVSGLAKPRGASEPPESLRFASVPVSEPLVYIISEPAPPPVQVVLPASPPRWKAGHGFAAGLSLM
AVLMAGSFVIWQSVSSDPVRETLLATASPLPIPLSANSIAELKKQASDVEWARLAEPVLQASATQLDQLAQLPPLWAQAR
GDALLSQAQQLWPASQEVKRLSTLWQQQREAGAAPLVELKHYALAQDRLRQLAERLNSLDEKKRGYMTVSELKSAVFAIQ
QPLAQAVPLEELLRQYQEQLESGQTPSSALRQQIDSRFSQLLNRYALLVVPPGVQ*

  Nucleotide sequence: 1368 bp    

>T6CP008680 NC_010465:c2839966-2838599 [Yersinia pseudotuberculosis YPIII] [TssA]
ATGGCAGGTAATACCGAGCGTCTGCTGAAAACCGGTGGCGACCCGCGCGCACTGGCGGATTTCACCGCACTGCGGGGTGA
ATTAAATAAACTGGCCCACCCGGCCCGCCCGGATGTTGACTGGGCGCGGGTTGAGCAACTGTGTCTGGCGCTATTTCGCC
AGAACGGCGTTGAGTTACAGACCGCCGTTGATTTTACCCTGGCACGAACGCACACCGCCGGGTTGGCGGGTTTATGTGAA
GGGCTGGAACTGTTGGCGGGGTTGGTCTGCCATCAATGGAGTGGGTTATGGCCACCGCAAACGCATGTCCGGGTGGCGTT
ACTGGCCTGGCTGAGTGACCGGCTGCAACAAGTGTGGCGCACCATGACGTTATGCTACGGTGACCTGGCGCAGGTGTACC
GGGCAGAGCGGGCGCTGGAACAGTTGTGCGCACAGTTGCAAACGCTGGAGCTCAAACATTTGTGCAAGCTGGACGGGGTT
CGTTTGATGCTGCATAACGCGGCGCAGCGGTTGGAAAGTACCGAGGCCGTGTCTGGCCTTGCGAAACCACGGGGTGCCTC
TGAACCGCCCGAGTCGCTGCGATTTGCCTCTGTCCCGGTCAGTGAACCACTGGTGTATATTATCAGCGAACCGGCCCCGC
CACCTGTTCAGGTGGTTTTACCTGCCTCACCTCCGCGCTGGAAGGCGGGCCACGGTTTTGCCGCGGGGTTATCGTTGATG
GCGGTGCTGATGGCCGGCAGTTTCGTTATCTGGCAGTCGGTATCATCGGATCCCGTGAGGGAAACATTGCTGGCCACTGC
CAGTCCTTTGCCGATACCGCTGAGTGCTAACTCAATAGCTGAACTGAAAAAACAGGCTTCAGATGTTGAGTGGGCACGTC
TGGCGGAACCGGTGTTGCAAGCCAGTGCGACGCAGTTAGATCAACTGGCACAGTTACCGCCGTTATGGGCGCAGGCTCGG
GGGGATGCCTTGCTATCTCAGGCGCAACAACTGTGGCCCGCGAGTCAAGAGGTCAAACGGTTGAGCACTTTGTGGCAGCA
ACAGCGAGAAGCCGGTGCTGCGCCCTTGGTAGAGTTGAAACACTATGCATTGGCGCAAGACCGTTTGCGGCAACTGGCAG
AACGACTGAATAGTCTGGATGAGAAAAAACGCGGATATATGACGGTCTCCGAACTGAAATCTGCCGTCTTTGCTATCCAA
CAGCCGCTGGCACAGGCCGTGCCACTGGAAGAACTGCTGCGGCAATATCAGGAACAATTAGAATCAGGGCAAACTCCATC
CTCAGCACTGCGTCAACAGATTGACAGCCGGTTTAGTCAACTGCTGAACCGCTATGCGTTGCTGGTCGTACCTCCTGGCG
TTCAGTAA