SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP002557
Component protein type	TssE
T6SS ID (Type)	T6SS00259 (Type i2)
Strain	Yersinia pseudotuberculosis YPIII
Replicon	chromosome
Sequence	Protein sequence (151 a.a.); Nucleotide sequence (453 bp)
Reference	[1] Zhang W, Xu S, Li J, et al. Modulation of a thermoregulated type VI secretion system by AHL-dependent quorum sensing in Yersinia pseudotuberculosis. Arch Microbiol. 2011 May;193(5):351-63. doi: 10.1007/s00203-011-0680-2. Epub 2011 Feb 5. PMID: 21298257 [2] Zhang W, Wang Y, Song Y, et al. A type VI secretion system regulated by OmpR in Yersinia pseudotuberculosis functions to maintain intracellular pH homeostasis. Environ Microbiol. 2013 Feb;15(2):557-69. doi: 10.1111/1462-2920.12005. Epub 2012 Oct 24. PMID: 23094603

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	YPK_RS12925
Coordinate (Strand)	2839991..2840443 (-)
NCBI ID	WP_011192093.1
RefSeq	NC_010465
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
GPW_gp25	PF04965.16	7.3e-09	35..116

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-150	MPDSSSPSLYEQLLGNFTGGLDLHQVSDENQVILSVLDNMQRILNCRAGTLSHLPDYGLPDMSKILQGLPGSAHSLLTTLSATLLKYEPRLKSLQVILLPQTTPGHLEYAIDAELKGLGLVRYGTAFMPEGRVLMRHLKQQHYLNQRESF

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9927	-	-

Protein sequence: 151 a.a.

						>T6CP002557 NC_010465:c2840443-2839991 [Yersinia pseudotuberculosis YPIII] [TssE]
MPDSSSPSLYEQLLGNFTGGLDLHQVSDENQVILSVLDNMQRILNCRAGTLSHLPDYGLPDMSKILQGLPGSAHSLLTTL
SATLLKYEPRLKSLQVILLPQTTPGHLEYAIDAELKGLGLVRYGTAFMPEGRVLMRHLKQQHYLNQRESF*					

Nucleotide sequence: 453 bp

						>T6CP002557 NC_010465:c2840443-2839991 [Yersinia pseudotuberculosis YPIII] [TssE]
ATGCCGGATTCCTCCTCGCCGTCACTGTATGAGCAATTGCTGGGCAATTTCACCGGCGGGCTTGACCTGCATCAGGTCAG
TGACGAAAACCAGGTCATTCTCTCGGTGCTGGACAATATGCAGCGCATTCTTAATTGTCGGGCCGGAACACTCAGTCATC
TGCCCGATTATGGCCTGCCGGACATGAGTAAAATTCTGCAGGGGTTGCCGGGCAGCGCGCATTCGCTGCTGACCACGCTG
TCCGCTACCTTGCTGAAGTACGAGCCGCGTCTGAAAAGTTTGCAGGTGATTCTGTTGCCACAGACCACACCCGGTCATCT
GGAATACGCCATTGATGCGGAGCTGAAAGGGCTGGGACTGGTGCGGTATGGCACGGCGTTTATGCCTGAGGGTAGGGTGC
TGATGCGCCATCTTAAACAACAACACTACCTCAATCAGCGGGAGTCATTTTGA					