SecReT6, T6SS database

Agrobacterium fabrum

Experimental investigation has been performed.

Bioinformatics investigation has been performed

T6SS ID	Type	Organism	Replicon (Accession)	Location	Function
T6SS00016	i5	Agrobacterium fabrum str. C58	chromosome linear (NC_003063)	1460756..1488734	anti-eukaryotic; anti-bacterial; effector translocation
T6SS01240	i5	Agrobacterium fabrum strain 1D132	chromosome (NZ_CP033023)	1429744..1454431	anti-bacterial
T6SS01243	i5	Agrobacterium fabrum strain 12D13	chromosome (NZ_CP033035)	1420086..1444587	anti-bacterial

Experimental investigation has been performed.

Bioinformatics investigation has been performed

Regulator ID	Locus tag (Gene)	Related T6SS	Regulator type	Regulatory pathway	Organism	Replicon (Accession)	Coordinates (Strand)	NCBI ID	Target (Regulation)
REG0077	Atu4335 (Fha/TagH)	T6SS00016	protein	Tpp	Agrobacterium fabrum str. C58	chromosome (NC_003063)	1467064..1468263 (-)	499280697	Unknown (↓)
REG0078	Atu4330 (PpkA)	T6SS00016	protein	Tpp	Agrobacterium fabrum str. C58	chromosome (NC_003063)	1458366..1459271 (-)	737274050	Unknown (↓)
REG0079	Atu4331 (TagF-PppA)	T6SS00016	protein	Tpp	Agrobacterium fabrum str. C58	chromosome (NC_003063)	1459258..1460673 (-)	159186120	Fha (Atu4335) (↑)
REG0080	Atu2091	T6SS00016	protein	c-di-GMP regulatory pathway	Agrobacterium fabrum str. C58	chromosome (NC_003063)	2054055..2054864 (-)	159185045	the levels of c-di-GMP (↑)
REG0081	Atu5372	T6SS00016	protein	c-di-GMP regulatory pathway	Agrobacterium fabrum str. C58	chromosome (NC_003064)	363293..364387 (+)	1805892863	the levels of c-di-GMP (↑)
REG0082	Atu1257 (DgcA)	T6SS00016	protein	c-di-GMP regulatory pathway	Agrobacterium fabrum str. C58	chromosome (NC_003062)	1244567..1245814 (-)	159184686	the levels of c-di-GMP (↑)
REG0083	Atu2179 (DgcC)	T6SS00016	protein	c-di-GMP regulatory pathway	Agrobacterium fabrum str. C58	chromosome (NC_003062)	2154605..2155744 (-)	159185090	the levels of c-di-GMP (↑)
REG0084	chvG	T6SS00016	protein	TCS-HK	Agrobacterium fabrum str. C58	chromosome (NC_003062)	34679..36469 (-)		chvI (↓)
REG0085	chvI	T6SS00016	protein	TCS-RR	Agrobacterium fabrum str. C58	chromosome (NC_003062)	36525..37250 (-)		The intergenic region of the imp and hcp operons (↓)
REG0086	exoR	T6SS00016	protein	TCS regulatory pathway	Agrobacterium fabrum str. C58	chromosome (NC_003062)	1702398..1703192 (-)		chvG (↑)

Experimental investigation has been performed.

Bioinformatics investigation has been performed

Effector ID	Locus tag (Gene)	Classification	Cognate immunity protein	Related T6SS	Organism	Replicon (Accession)	Coordinates (Strand)	NCBI ID
EFF00996	Atu4347 (Tae4)	Tae	IMU00053 ; IMU00192	T6SS00016	Agrobacterium fabrum str. C58	chromosome (NC_003063)	1480980..1481480 (+)	159186127
EFF01852	At1D132_RS21395 (Tae4)	Tae		T6SS01240	Agrobacterium fabrum strain 1D132	chromosome (NZ_CP033023)	1451466..1451966 (+)	493359403
EFF01860	ATU_RS20360 (Tae4)	Tae	-	T6SS01243	Agrobacterium fabrum strain 12D13	chromosome (NZ_CP033035)	1480980..1481480 (+)	493359403
EFF01308	Atu4350 (Tde1)	Tde	-	T6SS00016	Agrobacterium fabrum str. C58	chromosome (NC_003063)	1484901..1485737 (+)	15890633
EFF01307	Atu3640 (Tde2)	Tde	IMU00054	T6SS00016	Agrobacterium fabrum str. C58	chromosome (NC_003063)	692241..693821 (-)	15891300
EFF01853	At1D132_RS21410 (Tde1)	Tde	-	T6SS01240	Agrobacterium fabrum strain 1D132	chromosome (NZ_CP033023)	1455387..1456223 (+)	499280706
EFF00024	ATU_RS20350	-	-	T6SS00016	Agrobacterium fabrum str. C58	chromosome (NC_003063)	1479996..1480472 (+)	15890638
EFF01851	At1D132_RS21385 (Hcp)	-	-	T6SS01240	Agrobacterium fabrum strain 1D132	chromosome (NZ_CP033023)	1450482..1450958 (+)	489600119
EFF01859	At12D13_RS20965 (Hcp)	-		T6SS01243	Agrobacterium fabrum strain 12D13	chromosome (NZ_CP033035)	1440824..1441300 (+)	489600119

Experimental investigation has been performed.

Bioinformatics investigation has been performed

Immunity protein ID	Locus tag (Gene)	Related T6SS	Organism	Replicon (Accession)	Coordinates (Strand)	Protein GI	Cognate effector
IMU00053	Atu4351 (Tdi1)	T6SS00016	Agrobacterium fabrum str. C58	chromosome (NC_003063)	1485765..1486439 (+)	15890632	EFF00996
IMU00054	Atu3639 (Tdi2)	T6SS00016	Agrobacterium fabrum str. C58	chromosome (NC_003063)	691507..692238 (-)	159185838	EFF01307
IMU00192	Atu4346 (Tai4)	T6SS00016	Agrobacterium fabrum str. C58	chromosome (NC_003063)	1480579..1480968 (+)	159186126	EFF00996

Experimental investigation has been performed.

Bioinformatics investigation has been performed

ID	Locus tag (Gene)	Organism	Replicon (Accession)	Coordinates (Strand)	Protein GI	Response to T6SS attack	Known or putative function

Experimental investigation has been performed.

Bioinformatics investigation has been performed

Accessory protein ID	Locus tag (Gene)	Related T6SS	Type	Organism	Replicon (Accession)	Coordinates (Strand)	Protein GI	Related structure protein	Related effector
ACP00010	Atu4349 (tap-1)	T6SS00016	adaptor	Agrobacterium fabrum str. C58	chromosome (NC_003063)	1483948..1484904 (+)	737273750	Atu4348 (VgrG1)	Atu4350 (Tde1)
ACP00011	Atu3641	T6SS00016	adaptor	Agrobacterium fabrum str. C58	chromosome (NC_003063)	693818..694927 (-)	499279473	Atu3642 (VgrG2)	Atu3640 (Tde2)