MGE detailed information
MGE type: Genomic_island MGE length: 26521 bp
Accession: NC_003919 Location: 2820490..2847010 Organism: Xanthomonas axonopodis pv. citri str. 306 Replicon: chromosome
Accession: NC_003919 Location: 2820490..2847010 Organism: Xanthomonas axonopodis pv. citri str. 306 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XAC_RS12280 (XAC2415) | 2817412..2817588 | - | 177 | WP_011051567.1 | DUF3606 domain-containing protein | - |
| XAC_RS12285 (XAC2416) | 2817808..2818209 | + | 402 | WP_003485983.1 | H-NS histone family protein | - |
| XAC_RS12295 (XAC2418) | 2818498..2819589 | + | 1092 | WP_015463304.1 | site-specific integrase | - |
| XAC_RS12305 (XAC2419) | 2820490..2822661 | + | 2172 | WP_011051569.1 | DotA/TraY family protein | - |
| XAC_RS12310 (XAC2420) | 2822671..2823192 | + | 522 | WP_011051570.1 | hypothetical protein | - |
| XAC_RS25605 | 2823631..2823771 | - | 141 | WP_157860651.1 | hypothetical protein | - |
| XAC_RS26110 (XAC2422) | 2824057..2825013 | - | 957 | WP_011051571.1 | hypothetical protein | - |
| XAC_RS12320 (XAC2423) | 2825080..2826213 | - | 1134 | Protein_2414 | IS5 family transposase ISXo4 | Transposase |
| XAC_RS12325 (XAC2424) | 2826253..2827340 | - | 1088 | Protein_2415 | IS3 family transposase ISXcd1 | Transposase |
| XAC_RS12335 | 2827553..2827732 | - | 180 | WP_015463309.1 | hypothetical protein | - |
| XAC_RS12340 | 2828003..2828317 | - | 315 | WP_015463310.1 | hypothetical protein | - |
| XAC_RS12345 (XAC2428) | 2828320..2828610 | - | 291 | WP_011051576.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| XAC_RS12350 (XAC2429) | 2828598..2828876 | - | 279 | WP_004541313.1 | CopG family ribbon-helix-helix protein | Antitoxin Detail |
| XAC_RS12355 (XAC2430) | 2829046..2830314 | - | 1269 | Protein_2420 | Tn3 family transposase ISPsy42 | Transposase |
| XAC_RS12365 (XAC2432) | 2830363..2831588 | + | 1226 | Protein_2421 | IS3 family transposase ISJsp1 | Transposase |
| XAC_RS12370 (XAC2433) | 2832206..2833162 | + | 957 | WP_197707729.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| XAC_RS12375 (XAC2434) | 2833352..2835460 | + | 2109 | WP_011051581.1 | AAA family ATPase | - |
| XAC_RS12380 (XAC2435) | 2835511..2835699 | + | 189 | WP_011051582.1 | hypothetical protein | - |
| XAC_RS12385 (XAC2436) | 2835696..2837282 | + | 1587 | WP_011051583.1 | N-6 DNA methylase | - |
| XAC_RS12390 (XAC2437) | 2837279..2838196 | + | 918 | WP_011051584.1 | XamI family restriction endonuclease | - |
| XAC_RS12395 (XAC2438) | 2838205..2838534 | + | 330 | WP_015463316.1 | hypothetical protein | - |
| XAC_RS12400 (XAC2439) | 2838638..2839048 | + | 411 | WP_011051586.1 | plasmid pRiA4b ORF-3 family protein | - |
| XAC_RS26150 | 2839071..2839247 | - | 177 | WP_015463318.1 | hypothetical protein | - |
| XAC_RS26155 | 2839310..2839495 | - | 186 | WP_015463319.1 | hypothetical protein | - |
| XAC_RS23685 (XAC2440) | 2839440..2839640 | - | 201 | WP_011051587.1 | ribbon-helix-helix protein, CopG family | - |
| XAC_RS12410 | 2840201..2840461 | + | 261 | WP_015463320.1 | hypothetical protein | - |
| XAC_RS12415 (XAC2441) | 2840860..2841861 | - | 1002 | WP_011051588.1 | replication protein | - |
| XAC_RS12420 | 2842094..2842327 | + | 234 | WP_040107635.1 | hypothetical protein | - |
| XAC_RS12425 (XAC2443) | 2842906..2844300 | + | 1395 | WP_011051590.1 | SIR2 family protein | - |
| XAC_RS12430 (XAC2444) | 2844297..2846414 | + | 2118 | WP_011051591.1 | ATP-binding protein | - |
| XAC_RS25965 (XAC2445) | 2846834..2847010 | + | 177 | WP_003485979.1 | hypothetical protein | - |
| XAC_RS12440 (XAC2446) | 2847293..2848399 | + | 1107 | WP_016849926.1 | diguanylate cyclase | - |
| XAC_RS12445 (XAC2447) | 2848442..2848951 | - | 510 | WP_011051594.1 | chemotaxis protein CheW | - |
| XAC_RS12450 (XAC2448) | 2848963..2850621 | - | 1659 | WP_011051595.1 | MCP four helix bundle domain-containing protein | - |
| XAC_RS12455 (XAC2449) | 2850932..2851537 | + | 606 | WP_170914521.1 | DNA-3-methyladenine glycosylase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Xanthomonas citri subsp. citri Aw12879 | Genomic island | TA29262 | NC_020815 | 2300855..2327384 | 0.001 | |
| Xanthomonas citri subsp. citri A306 | Genomic island | TA45715 | NZ_CP006857 | 2820484..2847004 | 0 | |
| Xanthomonas citri pv. citri strain UI7 | Genomic island | TA48010 | NZ_CP008989 | 2809733..2836255 | 0 | |
| Xanthomonas citri subsp. citri UI6 | Genomic island | TA48018 | NZ_CP008992 | 2809736..2836258 | 0 | |
| Xanthomonas citri pv. citri strain NT17 | Genomic island | TA48026 | NZ_CP008995 | 2820489..2847009 | 0 | |
| Xanthomonas citri pv. citri strain MN12 | Genomic island | TA48034 | NZ_CP008998 | 2809322..2835843 | 0 | |
| Xanthomonas citri pv. citri strain MN11 | Genomic island | TA48042 | NZ_CP009001 | 2808010..2834531 | 0 | |
| Xanthomonas citri pv. citri strain MN10 | Genomic island | TA48050 | NZ_CP009004 | 2809332..2835853 | 0 | |
| Xanthomonas citri pv. citri strain MF20 | Genomic island | TA48058 | NZ_CP009007 | 2820483..2847003 | 0 | |
| Xanthomonas citri pv. citri strain JX5 | Genomic island | TA48066 | NZ_CP009010 | 2809318..2835839 | 0 | |
| Xanthomonas citri pv. citri strain JX4 | Genomic island | TA48074 | NZ_CP009013 | 2809303..2835824 | 0 | |
| Xanthomonas citri pv. citri strain GD3 | Genomic island | TA48082 | NZ_CP009016 | 2809752..2836273 | 0 | |
| Xanthomonas citri pv. citri strain GD2 | Genomic island | TA48090 | NZ_CP009019 | 2809750..2836271 | 0 | |
| Xanthomonas citri pv. citri strain FB19 | Genomic island | TA48098 | NZ_CP009022 | 2820482..2847002 | 0 | |
| Xanthomonas citri pv. citri strain BL18 | Genomic island | TA48106 | NZ_CP009025 | 2820482..2847002 | 0 | |
| Xanthomonas citri pv. citri strain 5208 | Genomic island | TA48114 | NZ_CP009028 | 2820486..2847006 | 0 | |
| Xanthomonas citri pv. citri strain AW13 | Genomic island | TA48121 | NZ_CP009031 | 2300671..2327200 | 0.001 | |
| Xanthomonas citri pv. citri strain AW14 | Genomic island | TA48128 | NZ_CP009034 | 2300672..2327201 | 0.001 | |
| Xanthomonas citri pv. citri strain AW15 | Genomic island | TA48135 | NZ_CP009037 | 2300669..2327198 | 0.001 | |
| Xanthomonas citri pv. citri strain AW16 | Genomic island | TA48142 | NZ_CP009040 | 2300623..2327152 | 0.001 | |
| Xanthomonas citri pv. citri strain jx-6 | Genomic island | TA55074 | NZ_CP011827 | 2809320..2835841 | 0.001 | |
| Xanthomonas citri pv. citri strain LL074-4 | Genomic island | TA70699 | NZ_CP018847 | 2645661..2673577 | 0.003 | |
| Xanthomonas citri pv. citri strain LJ207-7 | Genomic island | TA70704 | NZ_CP018850 | 665712..692231 | 0 | |
| Xanthomonas citri pv. citri strain LH276 | Genomic island | TA70714 | NZ_CP018854 | 3154688..3181208 | 0 | |
| Xanthomonas citri pv. citri strain LH201 | Genomic island | TA70719 | NZ_CP018858 | 784895..812810 | 0.003 | |
| Xanthomonas citri pv. citri strain TX160042 | Genomic island | TA75621 | NZ_CP020882 | 2403293..2434757 | 0.006 | |
| Xanthomonas citri pv. citri strain TX160149 | Genomic island | TA75625 | NZ_CP020885 | 1909504..1939050 | 0.004 | |
| Xanthomonas citri pv. citri strain TX160197 | Genomic island | TA75638 | NZ_CP020889 | 4016493..4047957 | 0.006 | |
| Xanthomonas citri pv. citri strain 03-1638-1-1 | Genomic island | TA80707 | NZ_CP023285 | 2936632..2963154 | 0 | |
| Xanthomonas citri pv. citri strain Xcc29-1 | Genomic island | TA85837 | NZ_CP023661 | 2820040..2846560 | 0.001 | |
| Xanthomonas citri pv. citri strain Xcc49 | Genomic island | TA85842 | NZ_CP023662 | 2809374..2835894 | 0 | |
| Xanthomonas citri strain T4 | Genomic island | TA169646 | NZ_CP059992 | 2838848..2865368 | 0 | |
| Xanthomonas citri pv. citri strain B2 | Genomic island | TA169665 | NZ_CP059999 | 2808235..2834756 | 0 | |
| Xanthomonas citri pv. citri strain SN3-3 | Genomic island | TA169677 | NZ_CP060002 | 2878134..2905854 | 0.001 | |
| Xanthomonas citri pv. citri strain DAR72029 | Genomic island | TA170418 | NZ_CP060446 | 2878491..2910645 | 0.007 | |
| Xanthomonas citri pv. citri strain DAR73889 | Genomic island | TA170448 | NZ_CP060470 | 2227706..2258178 | 0.006 | |
| Xanthomonas citri pv. durantae strain LMG696 | Genomic island | TA184303 | NZ_CP066343 | 3009508..3039521 | 0.006 | |
| Xanthomonas citri pv. citri strain GD82 | Genomic island | TA203456 | NZ_CP075325 | 2885949..2912469 | 0 | |
| Xanthomonas citri pv. citri strain CQ13 | Genomic island | TA242888 | NZ_CP096227 | 2828310..2854830 | 0 |