Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relB-parE/ParE-RHH
Location 2817152..2817708 Replicon chromosome
Accession NZ_CP008998
Organism Xanthomonas citri pv. citri strain MN12

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag AMD14_RS12790 Protein ID WP_011051576.1
Coordinates 2817152..2817442 (-) Length 97 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag AMD14_RS12795 Protein ID WP_040259533.1
Coordinates 2817430..2817708 (-) Length 93 a.a.

Genomic Context

AMD14_RS12810AMD14_RS12815AMD14_RS25050AMD14_RS12765AMD14_RS12770AMD14_RS12780AMD14_RS12785AMD14_RS12790AMD14_RS12795AMD14_RS12800
Location: 2819195..2820420 (1226 bp)
Type: Others
Protein ID: Protein_2407
Location: 2821039..2821995 (957 bp)
Type: Others
Protein ID: WP_015463313.1
Location: 2812889..2813845 (957 bp)
Type: Others
Protein ID: WP_011051571.1
Location: 2813912..2815045 (1134 bp)
Type: Others
Protein ID: Protein_2400
Location: 2815085..2816172 (1088 bp)
Type: Others
Protein ID: Protein_2401
Location: 2816385..2816564 (180 bp)
Type: Others
Protein ID: WP_015463309.1
Location: 2816835..2817149 (315 bp)
Type: Others
Protein ID: WP_015463310.1
Location: 2817152..2817442 (291 bp)
Type: Toxin
Protein ID: WP_011051576.1
Location: 2817430..2817708 (279 bp)
Type: Antitoxin
Protein ID: WP_040259533.1
Location: 2817878..2819146 (1269 bp)
Type: Others
Protein ID: Protein_2406
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
AMD14_RS250502812889..2813845-957WP_011051571.1hypothetical protein-
AMD14_RS127652813912..2815045-1134Protein_2400IS5 family transposase-
AMD14_RS127702815085..2816172-1088Protein_2401IS3 family transposase-
AMD14_RS127802816385..2816564-180WP_015463309.1hypothetical protein-
AMD14_RS127852816835..2817149-315WP_015463310.1hypothetical protein-
AMD14_RS127902817152..2817442-291WP_011051576.1type II toxin-antitoxin system RelE/ParE family toxinToxin
AMD14_RS127952817430..2817708-279WP_040259533.1CopG family ribbon-helix-helix proteinAntitoxin
AMD14_RS128002817878..2819146-1269Protein_2406transposase-
AMD14_RS128102819195..2820420+1226Protein_2407IS3 family transposase-
AMD14_RS128152821039..2821995+957WP_015463313.1recombinase family protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
insideGenomic island--2809322..283584326521
insideIScluster/Tn--2813912..28204206508


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-94)

Antitoxin

Ribbon-helix-helix protein, CopG

(5-42)


Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 10831.41 Da        Isoelectric Point: 9.9308

>T48034 WP_011051576.1 NZ_CP008998:c2817442-2817152 [Xanthomonas citri pv. citri]
MPQVIFAPAAIGDMQRLREFLKPKSPDAARRAGEAIRRGVQALGAHPRMGRLIEDLPEQYREWLIDFGDSGYVARYRHAG
DTVTILAVRHQKEAGY

Download         Length: 291 bp

>T48034 NZ_CP008998:c2817442-2817152 [Xanthomonas citri pv. citri]
ATGCCACAAGTAATCTTTGCGCCGGCGGCGATCGGGGACATGCAACGGCTGCGCGAATTCCTGAAGCCGAAGAGTCCCGA
TGCCGCGAGGCGGGCCGGTGAAGCGATTAGGCGCGGCGTCCAGGCTCTCGGTGCCCACCCTCGAATGGGGCGGCTCATAG
AAGATCTGCCTGAACAGTATCGGGAGTGGCTTATCGATTTTGGGGATAGTGGCTATGTGGCTCGGTACCGCCACGCTGGC
GATACCGTCACGATTTTGGCCGTGCGACACCAGAAGGAAGCGGGGTACTGA

Antitoxin


Download         Length: 93 a.a.        Molecular weight: 10829.16 Da        Isoelectric Point: 4.9801

>AT48034 WP_040259533.1 NZ_CP008998:c2817708-2817430 [Xanthomonas citri pv. citri]
MVTATSIKLDDELKGRVQHLAEARRRTPHWIMREAIEQYVEREEKREALNRDTLKAWDEFQATGLRVTAEEVDKWLASWG
TDDELPPPECHK

Download         Length: 279 bp

>AT48034 NZ_CP008998:c2817708-2817430 [Xanthomonas citri pv. citri]
ATGGTTACGGCAACTTCCATCAAGCTTGATGATGAATTGAAAGGGCGGGTTCAGCACTTGGCCGAGGCGCGCCGGCGTAC
CCCGCATTGGATCATGCGCGAAGCCATTGAGCAGTACGTCGAGCGCGAGGAAAAGCGTGAGGCGTTGAACCGGGACACGC
TCAAGGCATGGGATGAATTTCAGGCGACGGGCCTGCGCGTGACCGCTGAGGAAGTGGACAAGTGGCTCGCGAGCTGGGGA
ACAGACGACGAACTGCCTCCGCCAGAATGCCACAAGTAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References