Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relB-parE/ParE-RHH
Location 2817133..2817689 Replicon chromosome
Accession NZ_CP009013
Organism Xanthomonas citri pv. citri strain JX4

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag AMD21_RS12790 Protein ID WP_011051576.1
Coordinates 2817133..2817423 (-) Length 97 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag AMD21_RS12795 Protein ID WP_040259533.1
Coordinates 2817411..2817689 (-) Length 93 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AMD21_RS24875 2812444..2812584 - 141 WP_157860651.1 hypothetical protein -
AMD21_RS25065 2812870..2813826 - 957 WP_011051571.1 hypothetical protein -
AMD21_RS12765 2813893..2815026 - 1134 Protein_2399 IS5 family transposase -
AMD21_RS12770 2815066..2816153 - 1088 Protein_2400 IS3 family transposase -
AMD21_RS12780 2816366..2816545 - 180 WP_015463309.1 hypothetical protein -
AMD21_RS12785 2816816..2817130 - 315 WP_015463310.1 hypothetical protein -
AMD21_RS12790 2817133..2817423 - 291 WP_011051576.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
AMD21_RS12795 2817411..2817689 - 279 WP_040259533.1 CopG family ribbon-helix-helix protein Antitoxin
AMD21_RS12800 2817859..2819127 - 1269 Protein_2405 transposase -
AMD21_RS12810 2819176..2820401 + 1226 Protein_2406 IS3 family transposase -
AMD21_RS12815 2821020..2821976 + 957 WP_015463313.1 recombinase family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Genomic island - - 2809303..2835824 26521
inside IScluster/Tn - - 2813893..2820401 6508


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-94)

Antitoxin

Ribbon-helix-helix protein, CopG

(5-42)


Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 10831.41 Da        Isoelectric Point: 9.9308

>T48074 WP_011051576.1 NZ_CP009013:c2817423-2817133 [Xanthomonas citri pv. citri]
MPQVIFAPAAIGDMQRLREFLKPKSPDAARRAGEAIRRGVQALGAHPRMGRLIEDLPEQYREWLIDFGDSGYVARYRHAG
DTVTILAVRHQKEAGY

Download         Length: 291 bp

>T48074 NZ_CP009013:c2817423-2817133 [Xanthomonas citri pv. citri]
ATGCCACAAGTAATCTTTGCGCCGGCGGCGATCGGGGACATGCAACGGCTGCGCGAATTCCTGAAGCCGAAGAGTCCCGA
TGCCGCGAGGCGGGCCGGTGAAGCGATTAGGCGCGGCGTCCAGGCTCTCGGTGCCCACCCTCGAATGGGGCGGCTCATAG
AAGATCTGCCTGAACAGTATCGGGAGTGGCTTATCGATTTTGGGGATAGTGGCTATGTGGCTCGGTACCGCCACGCTGGC
GATACCGTCACGATTTTGGCCGTGCGACACCAGAAGGAAGCGGGGTACTGA

Antitoxin


Download         Length: 93 a.a.        Molecular weight: 10829.16 Da        Isoelectric Point: 4.9801

>AT48074 WP_040259533.1 NZ_CP009013:c2817689-2817411 [Xanthomonas citri pv. citri]
MVTATSIKLDDELKGRVQHLAEARRRTPHWIMREAIEQYVEREEKREALNRDTLKAWDEFQATGLRVTAEEVDKWLASWG
TDDELPPPECHK

Download         Length: 279 bp

>AT48074 NZ_CP009013:c2817689-2817411 [Xanthomonas citri pv. citri]
ATGGTTACGGCAACTTCCATCAAGCTTGATGATGAATTGAAAGGGCGGGTTCAGCACTTGGCCGAGGCGCGCCGGCGTAC
CCCGCATTGGATCATGCGCGAAGCCATTGAGCAGTACGTCGAGCGCGAGGAAAAGCGTGAGGCGTTGAACCGGGACACGC
TCAAGGCATGGGATGAATTTCAGGCGACGGGCCTGCGCGTGACCGCTGAGGAAGTGGACAAGTGGCTCGCGAGCTGGGGA
ACAGACGACGAACTGCCTCCGCCAGAATGCCACAAGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References